Update standalone agent settings docs based on current [elastic-agent-reference.yml](https://github.com/elastic/elastic-agent/blob/main/elastic-agent.reference.yml). [Structure of a config file](https://github.com/elastic/ingest-docs/issues/372) will provide a skeleton linking to each of the above sections. Sections to fix up: - [ ] input https://github.com/elastic/ingest-docs/issues/556 - [ ] providers - [ ] output - [ ] ssl/tls - [ ] logging - [ ] feature flags Section to add: - [ ] agent_download