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v0.1

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@eliopato eliopato released this 21 Mar 10:22
· 103 commits to main since this release
v0.1
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Learn about vigilant mode.

Alpha version

Package still under active development

Supported Illumina Infinium array versions

  • human : 27k, 450k, MSA, EPIC, EPIC+, EPICv2
  • mouse : MM285
  • mammalian: Mammal40

Main functionalities

  • idat files parsing

  • data preprocessing

    • background correction
    • normalization
    • dye bias correction
    • pOOBAH
    • batch effect correction with ComBat

  • data analysis and visualisation

    • beta values (density, PCA, MDS, dendrogram...)
    • DMP and DMR, accounting for replicates / random effects
    • CNV

  • quality control

Full Changelog: https://github.com/eliopato/pylluminator/commits/v0.1

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