v0.2.0

[0.2.0]

Added

• Centralized Configuration: Introduced src/csrlite/common/config.py with CsrLiteConfig Pydantic model for managing global settings (column names, logging levels).
• Listing: Added logging configuration in src/csrlite/__init__.py.
• Integration Tests: Added tests/integration_test_pipeline.py covering the full pipeline from plan loading to RTF generation.
• Extended Testing: Added tests/test_plan_extended.py significantly increasing coverage for plan.py.

Changed

• Refactored count.py:
  • Decoupled calculation from formatting.
  • Split count_subject_with_observation into count_summary_data (numeric) and format_summary_table (string).
  • Preserved backward compatibility with a wrapper.
• Enhanced StudyPlan:
  • Migrated StudyPlan and related classes (Keyword, Population, Observation, etc.) from dataclasses to Pydantic models for robust validation.
  • Improved KeywordRegistry to better handle nested polymorphism and legacy group_label list structures.
• Dependencies:
  • Added structlog (optional) and standard logging integration.
  • Enforced pydantic>=2.0.0.

Fixed

• Static Analysis: Resolved all pyre, mypy, and ruff errors, including restoring the correct search path for Pyre.
• Polars Deprecation: Fixed is_in deprecation warning in ae_specific.py.
• Bug: Fixed TypeError in StudyPlan.__str__ where Dict was instantiated.

Removed

• Removed manual print statements in favor of structured logging.