feat: scaffold managed search subagents

[alishakawaguchi]

Summary

• scaffold managed Claude, Codex, and Gemini search subagents during setup
• require managed search subagents to use entire search --json so they do not open the interactive TUI

Test Plan

• mise run test:ci

---

Note

Medium Risk
Modifies the entire enable/configure setup path to write new agent files into repos, which could affect onboarding behavior and file overwrite semantics (though conflicts are explicitly avoided).

Overview
Adds scaffolding of an Entire-managed entire-search subagent when enabling hooks for Claude, Codex, or Gemini, with templates that explicitly require entire search --json (to avoid opening the interactive TUI).

Introduces setup_subagents.go to create/update managed subagent files, skip overwriting user-owned files, and report status to the CLI output; wires this into setupAgentHooks for both interactive and --agent flows. Expands unit + integration coverage to assert the subagent files are generated and contain the required marker and --json instructions.

^{Written by Cursor Bugbot for commit a135fd3. Configure here.}

[Copilot]

Pull request overview

Adds an entire search feature to the Entire CLI, including a Bubble Tea-powered interactive TUI, JSON output for automation/subagents, and automatic scaffolding of “managed search” subagent configs during setup.

Changes:

• Introduces a new entire search command with inline filters, pagination, JSON output, and an interactive TUI.
• Adds scaffolding logic + tests to generate managed search subagent files for Claude, Codex, and Gemini during agent setup.
• Adds unit + integration tests covering search behavior, parsing, TUI state transitions, and subagent scaffolding.

Reviewed changes

Copilot reviewed 9 out of 9 changed files in this pull request and generated 3 comments.

Show a summary per file

File	Description
go.mod	Promotes Bubble Tea/Bubbles deps to direct requirements for the search TUI.
cmd/entire/cli/status_style.go	Refactors terminal detection into isTerminalWriter reused by search.
cmd/entire/cli/setup.go	Hooks setup now also scaffolds managed search subagents and reports scaffold status.
cmd/entire/cli/setup_subagents.go	Implements managed search subagent scaffolding + conflict handling + templates.
cmd/entire/cli/setup_subagents_test.go	Adds unit tests for create/update/idempotency/conflict behavior of scaffolding.
cmd/entire/cli/search/search.go	Implements search client, inline filter parsing, repo filter validation.
cmd/entire/cli/search/search_test.go	Adds unit tests for URL construction, errors, filters, parsing, validation.
cmd/entire/cli/search/github.go	Adds GitHub remote URL parsing helper for owner/repo inference.
cmd/entire/cli/search_tui.go	Adds Bubble Tea TUI (browse/search/detail), pagination, static accessible output.
cmd/entire/cli/search_tui_test.go	Adds extensive TUI model tests and formatting helper tests.
cmd/entire/cli/search_cmd.go	Adds new search Cobra command with auth + git remote detection + output modes.
cmd/entire/cli/search_cmd_test.go	Tests command help text and JSON pagination defaults / accessible behavior.
cmd/entire/cli/root.go	Registers the new search command.
cmd/entire/cli/integration_test/setup_gemini_hooks_test.go	Verifies Gemini enable scaffolds managed search subagent content.
cmd/entire/cli/integration_test/setup_codex_hooks_test.go	Adds integration smoke test for Codex hooks + managed search agent scaffold.
cmd/entire/cli/integration_test/setup_claude_hooks_test.go	Verifies Claude enable scaffolds managed search subagent content.
.claude/agents/search.md	Adds a committed managed search subagent file for Claude.
.codex/agents/search.toml	Adds a committed managed search subagent file for Codex.
.gemini/agents/search.md	Adds a committed managed search subagent file for Gemini.

[alishakawaguchi]

bugbot run

[alishakawaguchi]

bugbot run

[cursor]

✅ Bugbot reviewed your changes and found no new issues!

Comment @cursor review or bugbot run to trigger another review on this PR