less duplication between enable and configure

[Soph]

This fixes an issue with entire configure --force not working only if you add --agent it worked, it now works in both cases.

Also while we at it let's remove some duplication and make entire enable use the same code path as entire configure except for the enabling part.

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Note

Medium Risk
Changes entire enable control flow on already-configured repos and alters hook installation behavior when --force is used, which could impact users’ existing agent hook setups. Risk is mitigated by added unit/integration coverage around the new routing and hook rewrite behavior.

Overview
Unifies behavior between entire enable and entire configure on repos that are already set up: when any setup-mutating flag is present (e.g. --force, strategy flags, telemetry, absolute hook path), enable now routes through the same manage/configure flow instead of the lightweight “already enabled” path.

Extends agent management to treat --force as a reinstall for already-selected agents, rewriting Entire-managed hooks (e.g. restoring the canonical Claude Stop hook) rather than reporting “No changes made.” Adds targeted unit and integration tests to validate --force routing and stale hook rewrite behavior for Claude Code.

^{Reviewed by Cursor Bugbot for commit 957163b. Configure here.}

[Copilot]

Pull request overview

This PR refactors the setup/enable flows to reduce duplication between entire enable and entire configure, and fixes the previously inconsistent behavior where entire configure --force only worked reliably when combined with --agent.

Changes:

• Adds a routing helper so entire enable can delegate to the setup/configure path when “setup-mutating” flags are used.
• Updates agent management to support forced hook reinstall for already-installed agents (--force).
• Adds unit + integration tests covering the new routing behavior and forced hook rewrites (Claude hooks).

Reviewed changes

Copilot reviewed 3 out of 3 changed files in this pull request and generated 2 comments.

File	Description
cmd/entire/cli/setup.go	Adds enableUsesSetupFlow, adjusts enable routing, and enables forced reinstalls in agent management.
cmd/entire/cli/setup_test.go	Adds unit tests for routing and for --force causing a reinstall in manage-agents flow.
cmd/entire/cli/integration_test/setup_claude_hooks_test.go	Adds integration tests verifying --force rewrites stale Claude hooks for both configure and enable --agent.

[cursor]

Cursor Bugbot has reviewed your changes and found 2 potential issues.

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^{Reviewed by Cursor Bugbot for commit 957163b. Configure here.}