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01_QC
eolesin edited this page Apr 21, 2021
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As described in the AMOR Subset Coassembly Protocol.
https://github.com/eolesin/AMOR_2020_Sub-Coassembly_Protocol/wiki/01_QC
All samples were scanned for human reads which were removed. This was accomplished using the human genome hg19 with a mask on hi conserved sequences using bbmap. Please see the AMOR Coassembly Protocol for details on this.
It is planned to subsequently remove common human-associated or kit-associated microbial contaminants, though this is planned to be done after assembly.