01_QC

As described in the AMOR Subset Coassembly Protocol.

https://github.com/eolesin/AMOR_2020_Sub-Coassembly_Protocol/wiki/01_QC

All samples were scanned for human reads which were removed.

This was accomplished using the human genome hg19 with a mask on hi conserved sequences using bbmap.

Please see the AMOR Coassembly Protocol for details on this.

It is planned to subsequently remove common human-associated or kit-associated microbial contaminants,

though this is planned to be done after assembly.