Move from setup.py to pyproject.toml

[mferrera]

Resolves #557

pyproject.toml is the home of the more modern and recommended build system and required to be uploaded to PyPI.

Some files were deleted as moved into there, and pre commit was deleted because I doubt we are using and it and CI catches it. But correct me if I'm wrong!

[berland]

The file ci/testkomodo.sh also requires a slight update in this PR.

[codecov-commenter]

Codecov Report

Merging #561 (be70e73) into main (606e0b3) will decrease coverage by 1.46%.
The diff coverage is 64.31%.

❗ Current head be70e73 differs from pull request most recent head afc6897. Consider uploading reports for the commit afc6897 to get more accurate results

@@            Coverage Diff             @@
##             main     #561      +/-   ##
==========================================
- Coverage   86.10%   84.65%   -1.46%     
==========================================
  Files          48       52       +4     
  Lines        6996     7466     +470     
==========================================
+ Hits         6024     6320     +296     
- Misses        972     1146     +174     

Impacted Files	Coverage Δ
src/subscript/co2_containment/co2_containment.py	44.06% <44.06%> (ø)
src/subscript/co2_containment/co2_calculation.py	67.10% <67.10%> (ø)
src/subscript/co2_containment/calculate.py	82.85% <82.85%> (ø)
src/subscript/eclcompress/allowlist.py	100.00% <100.00%> (ø)
src/subscript/eclcompress/eclcompress.py	94.76% <100.00%> (-0.77%)	⬇️

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[berland]

I am unsure of the importance of MANIFEST.in, it does not look like its instructions are in the new pyproject.toml?

[mferrera]

From what I gathered MANIFEST.in is not necessary when setuptools_scm is being used. It helps to include files that may not be included in a distribution by default (i.e., not Python modules/packages) [1], but setuptools_scm supersedes this by building distributions from files that are tracked by git. [2] (third paragraph)

[alifbe]

👍