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evanfebrianto / PyHealth Public

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Refactor FHIR ingest to flattened YAML-driven tables#2

Merged

evanfebrianto merged 9 commits intofeat/ehrmambaevanfebrianto/PyHealth:feat/ehrmambafrom

feat/fhir-flattened-pipeline-876devanfebrianto/PyHealth:feat/fhir-flattened-pipeline-876dCopy head branch name to clipboard

Apr 12, 2026

Conversation Commits9 (9)Checks Files changed

Merged

Refactor FHIR ingest to flattened YAML-driven tables#2
evanfebrianto merged 9 commits intofeat/ehrmambafrom
feat/fhir-flattened-pipeline-876d

Commits

Commits on Apr 11, 2026

refactor(fhir): flatten NDJSON into YAML-driven tables
evanfebrianto
committed
fix(fhir): align load_table with BaseDataset; fix patient-id fallback and tmp cleanup
evanfebrianto
committed
fix(datasets): naive UTC timestamps and drop null patient_id before cache sort
evanfebrianto
committed
fix(fhir): revert base_dataset.py; FHIR load_table self-contained with tz + dropna
evanfebrianto
committed

Commits on Apr 12, 2026

feat(datasets): enhance MIMIC4FHIRDataset with glob pattern support and improve documentation
evanfebrianto
committed
fix(datasets): add missing imports, rename misleading variable, add load_table maintenance note
evanfebrianto
committed
feat(fhir): enhance deceasedBoolean handling in MIMIC4FHIRDataset
evanfebrianto
committed
test(fhir): add timestamp to deceasedBoolean test case for consistency
evanfebrianto
committed
fix(datasets): ensure writers are closed properly in stream_fhir_ndjson_to_flat_tables
evanfebrianto
committed

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