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Arjun Prasad edited this page Sep 12, 2022 · 7 revisions

2022 ASM NGS Pre-conference workshop

This is the pre-conference workshop wiki where we'll take you through the projects used for the conference.

NEED DESCRIPTION OF WORKSHOP

Workshop organization

  • Part 1: SRA
    • Links to powerpoint
    • and/or projects
  • Part 2: NCBI Pathogen Detection
    • Background
    • Exercises
      • Project 1: Use BigQuery to search MicroBIGG-E and Isolates data
      • Project 3: Build a phylogeny of reference blaKPC alleles
      • Project 4: Look for evidence of positively selected sites in blaKPC genes

This work was supported by the National Center for Biotechnology Information of the National Library of Medicine (NLM) and the National Institute of Allergy and Infectious disease (NIAID), National Institutes of Health

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