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Updated package versions and download links for test images #5

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Jun 27, 2025
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Updated package versions and download links for test images #5

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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -24,7 +24,7 @@ Install the following packages in the newly created environment.
```
conda activate scale-up

conda install -c conda-forge "cellpose>=3.0,<4.0" tifffile=2025.6.11 "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
conda install -c conda-forge "cellpose>=3.0,<4.0" tifffile<2025.6.11 "zarr>=2.0,<3.0" dask=2025.5.1 distributed=2025.5.1 dask-image=2024.5.3 imagecodecs=2025.3.30
```

We'll open some image files that are compressed using `JPEG2000`, so we need `imagecodecs` to have access to this compression algorithm.
Expand All @@ -42,4 +42,4 @@ So it is a good idea to have it downloaded as well.

A crop of that image can be found [here](https://drive.google.com/file/d/17owNcq_Or6aBAyUVE33fyHSS0VvKuHSw/view?usp=sharing), along with its `Zarr` version [here](https://drive.google.com/file/d/1BmNxOrO3vOFPR-PCnV00DYgFsD1sDu47/view?usp=sharing).

A smaller example image can be found [here](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs), and its corresponding `Zarr` version is [here](https://drive.google.com/file/d/1MifgafB5mhVAvqjzEAAR_zQajAU5Dcya/view?usp=drive_link).
A smaller example image can be found [here](https://openslide.cs.cmu.edu/download/openslide-testdata/Aperio/CMU-1-Small-Region.svs), and its corresponding `Zarr` version [here](https://drive.google.com/file/d/1MifgafB5mhVAvqjzEAAR_zQajAU5Dcya/view?usp=drive_link).
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