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Fix HEMCO update#5

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joewallwork merged 12 commits intodevelopfrom
joe/hemco-v3.9.3
Nov 12, 2024
Merged

Fix HEMCO update#5
joewallwork merged 12 commits intodevelopfrom
joe/hemco-v3.9.3

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For some reason #4 didn't actually get to HEMCO v3.9.3, which is required for GEOS-Chem v.14.4.3. (It only went up to v3.9.1.) This PR finishes the job.

yantosca and others added 12 commits July 12, 2024 16:51
This commit addresses the issue in geoschem/HEMCO geoschem#281.

src/Extensions/hcox_megan_mod.F90
- Removed the calls to Diagn_Create for InvMEGAN diagnostics.
  These can be activated by adding the proper entries to the
  HEMCO_Diagn.rc file.

CHANGELOG.md
- Updated accordingly

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
docs/source/hco-config
- Fixed a few broken :literal: tags

CHANGELOG.md
- Updated accordingly

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings PR geoschem#282 (Remove InvMEGAN manual diagnostics from
hcox_megan_mod.F90, by @yantosca) into the HEMCO "no-diff-to-benchmark"
development stream.

This PR removes several obsolete manual diagnostics.  The diagnostics can
be scheduled by editing HEMCO_Diagn.rc instead.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
In order to make the HEMCO documentation easier to navigate,
we have done the following:

1. Converted several :option: tags to subsections, with named anchors.
   These will show up in the table of contents in the left nav bar.

2. Updated references to the new subsections accordingly.

3. Updated pages for clarity.  In several locations, use tables
   instead of descriptive paragraph to describe options and the
   behaviors they toggle.

4. Fixed indentation and trimmed trailing whitespace.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
- Added checklists
- Updated broken links
- Added link to GitHub pull request doc

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings documentation updates for the HEMCO 3.9.2 release
from the docs/dev branch into the HEMCO 3.9.2 development stream.

Updates in geos-chem-shared-docs include:
- Updated photolysis section (to reference Cloud-J)
- New Supplemental Guide for GEOS-Chem input data on AWS
- Updated the "View Related documentation" supplemental guide

Updates in docs/source include:
- Changing option tags to subsections in the HEMCO configuration
  documentation and elsewhere, so that they show up in the nav bar
- Updating references from option tags to subsections
- Fixing broken links
- Updating the CONTRIBUTING.md file to instruct users to update
  the CHANGELOG when submitting updates

Also updated the CHANGELOG.md file accordingly

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
Changed version numbers in:
- CHANGELOG.md
- CMakeLists.txt
- docs/source/conf.py
- src/Core/hco_error_mod.F90

See CHANGELOG.md for a list of updates in this version.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
.github/workflows/stale.yml
- Add brackets around the list for `exempt-issue-labels`.  Verified
  this syntax with the YAML linter yamllint.com.

CHANGELOG.md
- Updated accordingly

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
This merge brings the "dev/no-diff-to-benchmark" branch into main
in preparation for the HEMCO 3.9.3 release.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
Updated version numbers in:
- CHANGELOG.md
- CMakeLists.txt
- docs/source/conf.py
- src/Core/hco_error_mod.F90

Also updated .release/changeVersionNumbers.sh to echo that the
version numbers were updated in the "CHANGELOG.md" file.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
@joewallwork joewallwork added the enhancement New feature or request label Nov 12, 2024
@joewallwork joewallwork self-assigned this Nov 12, 2024
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Thanks @jwallwork23. This looks good to me.

@joewallwork
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Perfect, thanks @AdelekeBankole

@joewallwork joewallwork merged commit 87dc6c3 into develop Nov 12, 2024
@joewallwork joewallwork deleted the joe/hemco-v3.9.3 branch November 12, 2024 14:24
@joewallwork joewallwork added the deliverable4 Associated with deliverable 4 label Nov 22, 2024
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3 participants