rqtl2_to_bimbam

This is a Python program designed and written to convert genotype files and phenotype files from Rqtl2 format to BIMBAM format. These file formats are popular in most GeneNetwork analyses.

Installation

This part is still under development.......

Running rqtl2_to_bimbam

• You can download the script from the following link: rqtl2_to_bimbam
• The script contains functions to process and convert genotype and phenotype rqtl2 files to BIMBAM format
• For genotype files, run the following for more information:

  python rqtl2-to-bimbam.py genotype --help

• For phenotype files, run the following for more information:

  python rqtl2-to-bimbam.py phenotype --help

• The example_files folder contains input files for both genotype and phenotype rqtl2 files and the corresponding output files.