Skip to content

Update installation URLs and add CI #5

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 3 commits into from
Mar 12, 2025
Merged

Update installation URLs and add CI #5

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
3 commits
Select commit Hold shift + click to select a range
ce7ba92
Update FEM on Colab installation URL
francesco-ballarin Mar 2, 2025
96d0c09
Download mesh for demo 06
francesco-ballarin Mar 2, 2025
4053f5e
Add CI based on fem-on-colab/open-in-colab-workflow
francesco-ballarin Mar 2, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
34 changes: 34 additions & 0 deletions .github/workflows/ci.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
name: CI

on:
push:
branches:
- "**"
pull_request:
branches:
- main
schedule:
- cron: "0 0 * * WED"
workflow_dispatch:

jobs:
test_colab:
uses: fem-on-colab/open-in-colab-workflow/.github/workflows/workflow_call.yml@main
with:
work_directory: notebooks_copy
notebook_pattern: "**/*.ipynb"
notebook_preparation: |
rsync -avz --include="*.ipynb" --exclude="*" . notebooks_copy/
test_script: |
python3 -m pytest --nbval notebooks_copy
publish_on: artifact@notebooks

warn:
runs-on: ubuntu-latest
if: github.repository == 'firedrakeproject/notebooks' && github.ref == 'refs/heads/main' && github.event_name == 'schedule'
steps:
- name: Warn if scheduled workflow is about to be disabled
uses: fem-on-colab/warn-workflow-about-to-be-disabled-action@main
with:
workflow-filename: ci.yml
days-elapsed: 50
2 changes: 1 addition & 1 deletion 01-spd-helmholtz.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 02-poisson.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 03-elasticity.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 04-burgers.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 05-mixed-poisson.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
11 changes: 10 additions & 1 deletion 06-pde-constrained-optimisation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down Expand Up @@ -126,6 +126,15 @@
"This problem setup requires a mesh that is more complex than the built in ones Firedrake provides. Instead, it was created with [Gmsh](http://gmsh.info). It is loaded by using the `Mesh` constructor, passing the filename of the mesh in question."
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": [
"!rm -f stokes-control.msh && wget https://raw.githubusercontent.com/firedrakeproject/notebooks/refs/heads/main/stokes-control.msh"
]
},
{
"cell_type": "code",
"execution_count": null,
Expand Down
2 changes: 1 addition & 1 deletion 07-geometric-multigrid.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 08-composable-solvers.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 09-hybridisation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 10-sum-factorisation.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 11-extract-adjoint-solutions.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion 12-HPC_demo.ipynb
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,7 +10,7 @@
"try:\n",
" import firedrake\n",
"except ImportError:\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" !wget \"https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh\" -O \"/tmp/firedrake-install.sh\" && bash \"/tmp/firedrake-install.sh\"\n",
" import firedrake"
]
},
Expand Down
2 changes: 1 addition & 1 deletion utils/firedrake-colab-notebooks
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -25,7 +25,7 @@ colab_cell = nbformat.notebooknode.NotebookNode({
'source': '''try:
import firedrake
except ImportError:
!wget "https://fem-on-colab.github.io/releases/firedrake-install-real.sh" -O "/tmp/firedrake-install.sh" && bash "/tmp/firedrake-install.sh"
!wget "https://fem-on-colab.github.io/releases/firedrake-install-release-real.sh" -O "/tmp/firedrake-install.sh" && bash "/tmp/firedrake-install.sh"
import firedrake'''
})

Expand Down