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This pull request updates the io.github.pemsley.coot.yaml configuration file to ensure compatibility with newer versions of dependencies and improve clarity in the build process. The most important changes involve updates to dependency versions and adjustments to source references.

Dependency Updates:

  • Updated the gemmi module configuration to use -DUSE_PYTHON=ON instead of -DUSE_PYTHON=1 for clarity and consistency with modern conventions. The version tag for gemmi was also updated from v0.7.1 to v0.7.3. ([io.github.pemsley.coot.yamlL52-R59](https://github.com/flathub/io.github.pemsley.coot/pull/94/files#diff-55b9e84a877dbbef6cbca71f44f2c253217232100c0d81f840e1abf5346b24efL52-R59))

Source Reference Updates:

  • Changed the coot module source reference from a specific commit (a1e8ef5b22fcd6348807923943bd984494e594bf) to a release tag (Release-1.1.18) for easier tracking of the version being built. ([io.github.pemsley.coot.yamlL357-R357](https://github.com/flathub/io.github.pemsley.coot/pull/94/files#diff-55b9e84a877dbbef6cbca71f44f2c253217232100c0d81f840e1abf5346b24efL357-R357))

@eunos-1128 eunos-1128 self-assigned this Aug 3, 2025
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🚧 Test build enqueued.

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🚧 Started test build.

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🚧 Test build enqueued.

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🚧 Started test build.

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Test build succeeded. To test this build, install it from the testing repository:

flatpak install --user https://dl.flathub.org/build-repo/201646/io.github.pemsley.coot.flatpakref

@eunos-1128 eunos-1128 merged commit 6f01bd9 into flathub:master Aug 3, 2025
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eunos-1128 added a commit that referenced this pull request Oct 9, 2025
* Update io.github.pemsley.coot.yaml

- Replaced `--filesystem=home` with `--filesystem=host`
- Added `--filesystem=xdg-cache` and `--filesystem=xdg-data`

* gemmi: Bump to v0.7.3

* coot: Bump to Release-1.1.18

* Revert filesystem permissions

* Bump to Release-1.1.18 (#8) (#9)

* Bump to Release-1.1.18 (#8) (#96)

* Bump to Release-1.1.18 (#94)

* Bump to `6629ed9` (#10)

* Bump to `6629ed9` (#97)

* Update README.md

* Update README.md

* Rename module 'clipper4coot' to 'clipper'

* Remove redundant directory creation and add new command for monomers data

* Replace directory creation with sed command to update Makefile.am for monomers data

* Update sed command to correctly append monomers data in Makefile.am

* Update Makefile.am to include 'monomers' directory; refactor patch command

* Refactor patch file paths in the manifest

* Bump to Release-1.1.19 (#12)
eunos-1128 added a commit that referenced this pull request Oct 9, 2025
* Update io.github.pemsley.coot.yaml

- Replaced `--filesystem=home` with `--filesystem=host`
- Added `--filesystem=xdg-cache` and `--filesystem=xdg-data`

* gemmi: Bump to v0.7.3

* coot: Bump to Release-1.1.18

* Revert filesystem permissions

* Bump to Release-1.1.18 (#94)

* Update README.md

* Update README.md

* Rename module 'clipper4coot' to 'clipper'

* Remove redundant directory creation and add new command for monomers data

* Replace directory creation with sed command to update Makefile.am for monomers data

* Update sed command to correctly append monomers data in Makefile.am

* Update Makefile.am to include 'monomers' directory; refactor patch command

* Refactor patch file paths in the manifest

* Update README and manifest (#99)

* Bump to Release-1.1.19

Updated the tag for the source repository from Release-1.1.18 to Release-1.1.19.

* Delete patches/Makefile.am.patch

* Bump to Release-1.1.19 (#102)
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2 participants