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fmalmeida/bacannot v2.3

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@fmalmeida fmalmeida released this 03 Jun 22:28
· 336 commits to master since this release
v2.3
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Learn about vigilant mode.

The pipeline

bacannot, is a customisable, easy to use, pipeline that uses state-of-the-art software for comprehensively annotating prokaryotic genomes having only Docker and Nextflow as dependencies. It is able to annotate and detect virulence and resistance genes, plasmids, genomic islands, prophages, ICEs, KO, and more.

Release notes

v2.3

  • Dockerfile
    • The dockerfile structure has changed and its size reduced
    • started to track the main tools and databases with dockerfile release tags
    • Github actions wer set to update the main dockerfile containing the databases every month
    • Users can now easily update the databases in the docker image at any time
  • New modules
    • A module for identification of top 10 closest Refseq genomes has been added with RefSeq Masher
    • A module for focused detection of insertion sequences has been added with digIS
    • A new report has been added to summarise the most general annotation results
  • Small fixes
    • The image generated by the vfdb virulence report has been fixed
    • Examples of outputs have been added to the documentation
    • Barrnap is now properly outputting its version
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