Skip to content

[DOC] Intersphinx link to neurodsp #183

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Sep 25, 2020
Merged

[DOC] Intersphinx link to neurodsp #183

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 4 additions & 0 deletions doc/conf.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -138,3 +138,7 @@
'reference_url': {'fooof': None},
'remove_config_comments': True,
}

intersphinx_mapping = {
'neurodsp': ('https://neurodsp-tools.github.io/neurodsp/', None),
}
4 changes: 2 additions & 2 deletions motivations/concepts/plot_DoYouEvenOscillate.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -46,14 +46,14 @@

# Use NeuroDSP for time series simulations & analyses
from neurodsp import sim
from neurodsp.utils import create_times, set_random_seed
from neurodsp.utils import create_times
from neurodsp.spectral import compute_spectrum_welch
from neurodsp.plts import plot_time_series, plot_power_spectra

###################################################################################################

# Set random seed, for consistency generating simulated data
set_random_seed(21)
sim.set_random_seed(21)

# Simulation Settings
n_seconds = 2
Expand Down
14 changes: 6 additions & 8 deletions motivations/concepts/plot_IfYouFilterTheyWillCome.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -33,10 +33,10 @@
from fooof.bands import Bands

# Imports from NeuroDSP to simulate & plot time series
from neurodsp.sim import sim_powerlaw
from neurodsp.sim import sim_powerlaw, set_random_seed
from neurodsp.filt import filter_signal
from neurodsp.plts import plot_time_series
from neurodsp.utils import create_times, set_random_seed
from neurodsp.utils import create_times

###################################################################################################

Expand Down Expand Up @@ -96,8 +96,8 @@
band_sig = filter_signal(sig, s_rate, 'bandpass', f_range)

# Plot the time series of the current band, and adjust plot aesthetics
plot_time_series(times, band_sig, title=label + ' ' + str(f_range), ax=ax)
ax.set_xlim(0, n_seconds); ax.set_ylim(-1, 1); ax.set_xlabel('');
plot_time_series(times, band_sig, title=label + ' ' + str(f_range), ax=ax,
xlim=(0, n_seconds), ylim=(-1, 1), xlabel='')

###################################################################################################
#
Expand Down Expand Up @@ -159,8 +159,7 @@
band_sig = filter_signal(sig_delta_ap, s_rate, 'bandpass', bands.beta)

# Plot the filtered time series
plot_time_series(times, band_sig)
plt.xlim(0, n_seconds); plt.ylim(-1, 1);
plot_time_series(times, band_sig, xlim=(0, n_seconds), ylim=(-1, 1))

###################################################################################################
#
Expand All @@ -177,8 +176,7 @@
band_sig = filter_signal(sig_delta_ap, s_rate, 'bandpass', bands.high_gamma)

# Plot the filtered time series
plot_time_series(times, band_sig)
plt.xlim(0, n_seconds); plt.ylim(-1, 1);
plot_time_series(times, band_sig, xlim=(0, n_seconds), ylim=(-1, 1))

###################################################################################################
#
Expand Down