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MYDB
MYDB
 
 
assembly
assembly
 
 
cRNA
cRNA
 
 
scripts
scripts
 
 
.gitattributes
.gitattributes
 
 
.gitignore
.gitignore
 
 
README
README
 
 
d00_sample.py
d00_sample.py
 
 
d01_geneinfo.py
d01_geneinfo.py
 
 
d02_db_tables.py
d02_db_tables.py
 
 
func01_cluster.py
func01_cluster.py
 
 
infra00_ranges_operate.py
infra00_ranges_operate.py
 
 
infra01_pos2info.py
infra01_pos2info.py
 
 
infra02_blast_info_proc.py
infra02_blast_info_proc.py
 
 
infra03_conservation.py
infra03_conservation.py
 
 
infra04_matplotlib.py
infra04_matplotlib.py
 
 
infra05_MySQLDB.py
infra05_MySQLDB.py
 
 
infra06_bam_handle.py
infra06_bam_handle.py
 
 
module00_samples.py
module00_samples.py
 
 
module01.py
module01.py
 
 
module02_coverage.py
module02_coverage.py
 
 
module03_rna_procerss.py
module03_rna_procerss.py
 
 
module03_sub01_cRNA_explore.py
module03_sub01_cRNA_explore.py
 
 
module03db_cRNA_explore.py
module03db_cRNA_explore.py
 
 
module04_assembly.py
module04_assembly.py
 
 
module05_gene_dig.py
module05_gene_dig.py
 
 
module06_simulation.py
module06_simulation.py
 
 
module10_make_database.py
module10_make_database.py
 
 
module11_VCF.py
module11_VCF.py
 
 
module12_short.py
module12_short.py
 
 
module13_CNV.py
module13_CNV.py
 
 
module14_APA.py
module14_APA.py
 
 
module99_multithread_test.py
module99_multithread_test.py
 
 
p04.coverage.py
p04.coverage.py
 
 
py01.gene_expression.py
py01.gene_expression.py
 
 
py02.exome_enrichment_analysis.py
py02.exome_enrichment_analysis.py
 
 
pyscript00_all_references.py
pyscript00_all_references.py
 
 
pyscript01_db_mm9_info.py
pyscript01_db_mm9_info.py
 
 
pyscript02_exon_seq_db.py
pyscript02_exon_seq_db.py
 
 

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Python生物信息学模块
1：样品下机数据，各种比对脚本的生成，文件管理；
2：基因表达量的生成和存储到数据库中；

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