Update 16 deps; all tests pass

[opencode-agent]

Dependencies updated across both projects. Here's the summary:

gradle/libs.versions.toml (Gradle/JVM project):

• kotlin: 2.3.10 → 2.3.21
• dokka: 2.1.0 → 2.2.0
• kover: 0.9.6 → 0.9.8
• logback-classic: 1.5.28 → 1.5.32
• jdbc-sqlite: 3.51.1.0 → 3.53.0.0
• jdbc-mssql: 13.2.1.jre11 → 13.4.0.jre11
• jdbc-mariadb: 3.5.7 → 3.5.8
• jdbc-mysql: 9.3.0 → 9.7.0
• jdbc-postgresql: 42.7.9 → 42.7.11
• junit-bom: 6.0.2 → 6.0.3
• testcontainers-bom: 2.0.3 → 2.0.5

build.sbt (Scala project):

• cats-effect: 3.6.3 → 3.7.0
• munit: 1.0.4 → 1.3.0
• munit-cats-effect: 2.1.0 → 2.2.0
• cats-effect-testkit: 3.6.3 → 3.7.0
• munit-scalacheck: 1.2.0 → 1.3.0
• sqlite-jdbc: 3.51.1.0 → 3.53.0.0

Closes #47

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