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a28d60d
docs(research): Add Data Pipeline Optimization Analysis + index v6.4 …
Mar 26, 2026
f917b1c
docs(research): v6.5 — VSA Memory Layout Optimization (#415)
Mar 26, 2026
26546a4
docs(research): v6.6 — Scientific Publication Patterns Zenodo (#415)
Mar 26, 2026
fe3e31e
docs(research): v6.7 — Sacred Attention Consciousness Analysis (#415)
Mar 26, 2026
89d56cf
docs(research): v6.8 — Session 4 Autonomous Cycle Report (#415)
Mar 26, 2026
2851879
feat(sacred): Enable formula_engine imports in math.zig v1.2 (#415)
Mar 26, 2026
19a8f31
docs(research): v6.9 — TRI-27 ISA Sacred Mathematics Analysis (#415)
Mar 26, 2026
db9a6d5
docs(research): v7.0 — Queen Self-Learning Policy Analysis (#415)
Mar 26, 2026
0219071
docs(research): v7.1 — Session 5 Autonomous Cycle Report FINAL (#415)
Mar 26, 2026
5d846ba
docs(research): v7.2 — FPGA VIBEE Comprehensive Analysis (#415)
Mar 26, 2026
ab07ef1
docs(research): v7.3 — Session 6 Autonomous Cycle Report (#415)
Mar 26, 2026
38f80b7
feat(sacred): Add formula_engine.zig — evidence classification and va…
Mar 26, 2026
ecb71e9
docs(discovery): resolve TODOs in p7, p19, p36 (#415)
Mar 26, 2026
ba79aba
docs(research): v7.4 — Sacred Training Dynamics φ Optimization (#415)
Mar 26, 2026
24e4c26
docs(research): v7.5 — Session 7 Autonomous Cycle Report (#415)
Mar 26, 2026
e40878b
feat(sacred,tri-lang): implement TODOs - expression counting, guard o…
Mar 26, 2026
256a0ec
docs(research): Ternary Neural Network comprehensive analysis (#415)
Mar 26, 2026
b0e113b
docs(research): Session 4 Autonomous Cycle Report (#415)
Mar 26, 2026
9cf5ba7
docs(research): Update RESEARCH_INDEX to v7.6 with TNN Comprehensive …
Mar 26, 2026
2d0bb3f
docs(zenodo): v5.1 enhancements — code examples, build instructions, …
Mar 26, 2026
c5cfede
docs(research): Session 5 Autonomous Cycle Report (#415)
Mar 26, 2026
7bea333
docs(zenodo): B003 v5.1 — TRI-27 ISA code examples and build instruct…
Mar 26, 2026
2db3007
docs(research): Add Consciousness Dual System Comprehensive Analysis …
Mar 26, 2026
ef3a936
docs(zenodo): B004 v5.1 — Queen Lotus Cycle code examples and build i…
Mar 26, 2026
508f40b
docs(research): Update RESEARCH_INDEX to v7.7 with Consciousness Dual…
Mar 26, 2026
3bbcc3b
docs(research): Session 9 Autonomous Cycle Report (#415)
Mar 26, 2026
c261690
docs(zenodo): B005 v5.1 — Tri Language code examples and build instru…
Mar 26, 2026
0b60483
docs(zenodo): B006 v5.1 & B007 v5.1 — code examples and build instruc…
Mar 26, 2026
9594768
docs(research): Zenodo v5.1 enhancements complete summary (#415)
Mar 26, 2026
d2d171b
docs(research): HSLM Neuroanatomical Architecture Comprehensive Analy…
Mar 26, 2026
1c1bbb6
fix(tri_string): Correct moduli variable reference (#415)
Mar 26, 2026
ccbff18
feat(tri_asm): Implement .tbin bytecode format emission (#415)
Mar 26, 2026
95fb6f0
docs(research): Update RESEARCH_INDEX to v7.9 (#415)
Mar 26, 2026
8b12610
docs(research): Zenodo FAIR 2025 Comprehensive Scientific Publication…
Mar 26, 2026
4e6b616
docs(zenodo): v5.2 enhancements with algorithm boxes, diagrams, stati…
Mar 26, 2026
734280b
docs(zenodo): v5.2 enhancements for B003 (TRI-27 ISA) and B004 (Queen…
Mar 26, 2026
cb62517
docs(zenodo): v5.2 enhancements for B005, B006, B007 (#415)
Mar 26, 2026
f614aee
docs(research): T-JEPA Comprehensive Analysis V2 (#415)
Mar 26, 2026
133574b
docs(zenodo): v5.2 completion summary — all 7 bundles enhanced (#415)
Mar 26, 2026
5af97eb
docs(zenodo): parent collection v5.2 with complete framework architec…
Mar 26, 2026
43ced67
docs(citation): update to v5.2.0 with algorithm boxes and diagrams (#…
Mar 26, 2026
d0c604d
docs(research): Sacred Attention Comprehensive Analysis V2 — Session …
Mar 26, 2026
8f49cfd
docs(research): Update RESEARCH_INDEX to v8.2 (#415)
Mar 26, 2026
0d37e68
docs(research): Ternary Activations & STE Comprehensive Analysis — Se…
Mar 26, 2026
1ad6b1f
feat(zenodo): add v5.2 publishing support with algorithm boxes, diagr…
Mar 26, 2026
86a2c1c
docs(zenodo): add comprehensive v5.2 upload guide with metadata and c…
Mar 26, 2026
a177282
docs(research): add Sacred Arithmetic Framework with phi-optimal form…
Mar 26, 2026
44d7fcd
docs(zenodo): add autonomous cycle summary for v5.2 enhancements (#415)
Mar 26, 2026
1652fd6
docs(readme): add v5.2 bundles section with algorithm boxes and diagr…
Mar 26, 2026
18fb4a5
docs(research): Trinity Block Dual-System Comprehensive Analysis — Se…
Mar 26, 2026
cf4391c
docs(research): add comprehensive scientific references bibliography …
Mar 26, 2026
4ad5b67
docs(zenodo): add comprehensive references sections to all v5.2 bundl…
Mar 26, 2026
a4e6692
docs(research): Session 16 — Sacred Mathematical Foundations Comprehe…
Mar 26, 2026
688c165
docs(research): add second autonomous cycle report with references su…
Mar 26, 2026
585a5cc
docs(research): add Trinity Scientific Manifesto with complete innova…
Mar 26, 2026
c3aa356
docs(research): Session 17 — HSLM Complete Architecture Synthesis (#415)
Mar 26, 2026
77f0cad
docs(research): add third autonomous cycle report + README manifesto …
Mar 26, 2026
74d3c92
docs(research): add comprehensive figures and video guide for Zenodo …
Mar 26, 2026
fe21279
docs(research): enhance research CITATION.cff with v5.2 metadata (#415)
Mar 26, 2026
bf742c3
docs(research): Session 18 — NeurIPS/ICLR Paper Template Complete (#415)
Mar 26, 2026
7f51296
docs(research): add Zenodo advanced patterns and 2026 papers (#415)
Mar 26, 2026
b4bc933
docs(research): add individual CITATION.cff for all 7 bundles (B001-B…
Mar 26, 2026
6b5ded0
docs(research): Session 19 — Experimental Methodology and Reproducibi…
Mar 26, 2026
87c4bd7
docs(research): add Zenodo bundles index and B001 README template (#415)
Mar 26, 2026
342ce45
docs(research): Sessions 13-19 Cumulative Summary — Publication Miles…
Mar 26, 2026
70c8a20
docs(research): add autonomous cycle report 2026-03-26 (#415)
Mar 26, 2026
7514c3b
docs(research): add statistical computing patterns 2026 (#415)
Mar 26, 2026
85e45bc
docs(research): update RESEARCH_INDEX_V3 to v8.9 (#415)
Mar 26, 2026
f50d9af
docs(research): Session 20 — VSA Operations Comprehensive Analysis (#…
Mar 26, 2026
f50da51
docs(research): add reproducibility guide 2026 (#415)
Mar 26, 2026
558b16d
docs(research): add fourth autonomous cycle report (#415)
Mar 26, 2026
f07e1b9
docs(research): add scientific README templates for all 7 bundles (B0…
Mar 26, 2026
607eb1f
docs(research): add fifth autonomous cycle report - FINAL STATUS (#415)
Mar 26, 2026
6967fef
docs(research): add .zenodo.json metadata files for all bundles (#415)
Mar 26, 2026
09da14f
docs(research): add Zenodo metadata validator script (#415)
Mar 26, 2026
82ee9f3
docs(research): add sixth autonomous cycle report (#415)
Mar 26, 2026
a7ae561
docs(research): update index with new scientific docs (#415)
Mar 26, 2026
1c87b59
docs(research): Update RESEARCH_INDEX to v9.0 (#415)
Mar 26, 2026
112df91
docs(research): add statistical quick reference card (#415)
Mar 26, 2026
ace7bbb
docs(research): Session 21 — Sacred Training Dynamics V2 Comprehensiv…
Mar 26, 2026
9a71c01
docs(research): add Zenodo upload helper and checksums (#415)
Mar 26, 2026
6cf4986
docs(research): add final Zenodo v5.2 report - COMPLETE (#415)
Mar 26, 2026
ae61659
docs(research): add complete Zenodo night report in Russian (#415)
Mar 26, 2026
f18f856
docs(research): add Russian scientific glossary 2026 (#415)
Mar 26, 2026
13b6c17
docs(research): add BibTeX bibliography and Schema.org metadata (#415)
Mar 26, 2026
a391fb5
docs(research): add Zenodo quick links table (#415)
Mar 26, 2026
881c2ee
docs(research): Update RESEARCH_INDEX to v9.1 (#415)
Mar 26, 2026
23d5017
docs(research): Session 22 — FPGA Sacred Mathematics Implementation (…
Mar 26, 2026
df68520
docs(research): add CrossRef XML for DOI registration (#415)
Mar 26, 2026
4dd3a26
docs(research): add eighth autonomous cycle report (#415)
Mar 26, 2026
188704b
docs(research): add EndNote XML and CSL citation style (#415)
Mar 26, 2026
674407e
docs(research): Update RESEARCH_INDEX to v9.2 (#415)
Mar 26, 2026
6198fcd
docs(research): add MEGA REPORT - all 9 cycles complete (#415)
Mar 26, 2026
5c84814
docs(research): Session 23 — Code Improvement Proposals Comprehensive…
Mar 26, 2026
91375cc
docs(research): add bundle completeness checker and sections template…
Mar 26, 2026
e2e7782
docs(research): Session 24 — Energy Efficiency Comprehensive Analysis…
Mar 26, 2026
f08cb1a
docs(zenodo): add Broader Impact, Ethics, Data/Code Availability, Ack…
Mar 26, 2026
23c76c1
docs(zenodo): Add Broader Impact sections to all v5.2 bundles (#415)
Mar 26, 2026
505cfdf
fix(research): update bundle completeness checker to support numbered…
Mar 26, 2026
40a59fb
docs(zenodo): enhance parent collection v5.2 with Broader Impact, Eth…
Mar 26, 2026
6656f67
docs(research): Session 25 — Scalability Comprehensive Analysis (#415)
Mar 26, 2026
96a9ef8
docs(research): update bundle improvement report (#415)
Mar 26, 2026
60a0362
docs(research): Session 26 — Zenodo Best Practices 2026 Comprehensive…
Mar 26, 2026
9a5e8ae
docs(research): remove Russian language documentation
Mar 26, 2026
7525547
docs(research): add comprehensive scientific improvements analysis
Mar 26, 2026
098bd1c
docs(research): cleanup Russian docs and update quick links (#415)
Mar 26, 2026
e8e77ea
docs(research): cleanup wave9 checkpoint files
Mar 26, 2026
4e6516b
docs(research): add computational complexity table to B001 v5.2
Mar 26, 2026
bde90d3
fix(website): Set base path to root for consistent deployment (#415)
Mar 26, 2026
0e0512a
docs(zenodo): add conference submission checklist 2026 (#415)
Mar 26, 2026
3b59e83
fix(website): remove duplicate function from cosmos.ts
Mar 26, 2026
2006001
docs(research): Session 27 — Security & Robustness Comprehensive (#415)
Mar 26, 2026
ada611b
docs(research): add NeurIPS 2026 LaTeX paper template for B001 (#415)
Mar 26, 2026
ca413d1
docs(readme): Clean up Zenodo section - keep only v5.2, update resear…
Mar 26, 2026
841f4db
docs(research): add computational complexity tables to Zenodo bundles…
Mar 26, 2026
857f23c
docs(research): add defensive publication guide + arXiv template + vi…
Mar 26, 2026
9bac6e2
docs(research): Session 28 — SOTA Comparison Comprehensive (#415)
Mar 26, 2026
ef0dc4f
docs(research): add effect size standardization framework (NeurIPS 20…
Mar 26, 2026
fb37c45
fix(vsa_core): switch to manual ops implementation (#415)
Mar 26, 2026
96085af
docs(research): add MLSys 2026 artifact appendix (#415)
Mar 26, 2026
224f082
fix(test): Remove timing checks from hard gate in e2e_test VERDICT (#…
Mar 26, 2026
11fa25c
docs(research): update research index v9.8 with new scientific docs (…
Mar 26, 2026
94a674a
docs(research): add bias assessment framework (ICLR 2027 compliance) …
Mar 26, 2026
8ea3f7c
docs(research): update research index v9.9 with bias assessment frame…
Mar 26, 2026
f9ecea7
docs(research): add autonomous cycle report — scientific enhancements…
Mar 26, 2026
bd54d1b
docs(research): add multiple testing correction framework (#415)
Mar 26, 2026
37d605e
docs(research): add failure mode taxonomy (NeurIPS 2026) (#415)
Mar 26, 2026
f265352
docs(research): update research index v10.0 with multiple testing + f…
Mar 26, 2026
9f63f68
fix(codegen): Use ArrayListUnmanaged in tri_to_zig for explicit memor…
Mar 26, 2026
560b04f
docs(research): autonomous cycle final report — all P0-critical compl…
Mar 26, 2026
feb09fa
refactor(codegen): Complete ArrayListUnmanaged migration in tri_to_zi…
Mar 26, 2026
fe85118
docs(research): add preregistration protocol (AsPredicted) (#415)
Mar 26, 2026
772d92d
docs(research): Session 29-30 — Publication Pipeline + Effect Sizes/M…
Mar 26, 2026
9944061
docs(research): add comprehensive publication roadmap 2026 (#415)
Mar 26, 2026
8cff798
feat(codegen): Add simplified tri_to_zig codegen (#415)
Mar 26, 2026
1ac34ff
docs(research): add Zenodo figure generation script (#415)
Mar 26, 2026
4539e66
fix(docs): correct training hardware info — Apple M1 Max, not H100 GP…
Mar 26, 2026
d1be374
feat(codegen): Add POC .tri→Zig codegen (#415)
Mar 26, 2026
e21231e
fix(docs): Clarify API status and version numbering (#415)
Mar 26, 2026
eb0d144
docs(research): add Bayesian metrics + enhanced citation network (#415)
Mar 26, 2026
5b09e96
docs(research): add session final report (#415)
Mar 26, 2026
829b105
docs(research): Session 31 — Neuro-φ Coupling + Sacred Mathematics Bi…
Mar 26, 2026
58924d5
feat(testing): Add unified test report formatter (#415)
Mar 26, 2026
b52dbba
docs(research): add experimental protocol + supplementary materials t…
Mar 26, 2026
54af928
docs(research): Session 31 Report — Neuro-φ Coupling Complete (#415)
Mar 26, 2026
57a49f6
docs(research): add statistical analysis checklist (#415)
Mar 26, 2026
9acd979
docs(research): add scientific figures guide (#415)
Mar 26, 2026
4626ef6
docs(research): Session 32 — φ-Optimized Training + Zenodo Best Pract…
Mar 26, 2026
e859a87
docs(research): add peer review response template (#415)
Mar 26, 2026
ea27306
docs(research): add session 31 final report (#415)
Mar 26, 2026
28baa2c
docs(research): add FAIR data principles compliance guide (#415)
Mar 26, 2026
08b44a3
docs(research): add paper submission readiness checklist (#415)
Mar 26, 2026
a67c814
docs(research): add scientific abstract + related work templates (#415)
Mar 26, 2026
3ee93a0
docs(research): Session 33 — Ternary Info Theory + Consciousness Back…
Mar 26, 2026
d1e0f49
docs(research): Session 33 extended — Sacred Proofs + Zenodo Patterns…
Mar 26, 2026
b1ea7cb
docs(research): add comprehensive Methods section template (#415)
Mar 26, 2026
34a4ae8
docs(research): Session 33 Progress Report — Complete Summary (ISSUE-…
Mar 26, 2026
d5fbf91
docs(research): add comprehensive Experimental Results template (#415)
Mar 26, 2026
bd3f9ed
docs(research): add Data Management + Code Availability templates (#415)
Mar 26, 2026
67c28d7
docs(research): add code improvement reprioritization plan (#415)
Mar 26, 2026
5c00f15
docs(research): Session 33 extended — T-JEPA + VSA Unified Analysis (…
Mar 26, 2026
0e809bc
fix(docs): API documentation clarification + test reporting infrastru…
Mar 26, 2026
2612b28
fix(build): Disable test_report_step for Zig 0.15 compatibility (#415)
Mar 26, 2026
0222da4
docs(research): translate Queen Lotus experiments to English (#415)
Mar 26, 2026
271fa80
docs(research): add Open Science Policy template (#415)
Mar 26, 2026
deacccc
docs(research): add Scientific Paper Structure template (#415)
Mar 26, 2026
5e6c217
docs(research): add Grant Proposal template (#415)
Mar 26, 2026
3845912
refactor(codegen): Add getTemplate function for file-based templates …
Mar 26, 2026
2ff9039
docs(research): Session 34 final report (#415)
Mar 26, 2026
6d0c3bd
docs(research): add Model Card + Dataset Card templates (#415)
Mar 26, 2026
1ee4b5c
docs(research): Session 35 final report (#415)
Mar 26, 2026
77dc29f
docs(i18n): translate Russian documentation to English (#415)
Mar 26, 2026
744526c
docs(research): add Scientific README template (#415)
Mar 26, 2026
d970d1c
docs(research): Sessions 34-35 comprehensive report (#415)
Mar 26, 2026
33eff56
docs(research): Session 33 retrospective (ISSUE-415)
Mar 26, 2026
6f12797
fix(i18n): translate Russian comments to English (#415)
Mar 26, 2026
a25b700
docs(research): add Scientific Poster template (#415)
Mar 26, 2026
a1b8175
docs(research): Update RESEARCH_INDEX to v11.6 (#415)
Mar 26, 2026
f150fa5
docs(research): add Conference Slide Deck + Poster templates (#415)
Mar 26, 2026
4006e89
docs(research): update research index to v12.7 (#415)
Mar 26, 2026
652a2c0
docs(research): Session 36 final report (#415)
Mar 26, 2026
77afb32
docs(research): comprehensive Sessions 34-36 report (#415)
Mar 26, 2026
26fafb7
fix(test): add missing config params to restarted providers (#415)
Mar 26, 2026
c16eb10
docs(research): add Peer Review Response template (#415)
Mar 26, 2026
4563189
docs(research): update research index to v12.8 (#415)
Mar 26, 2026
f8ef250
docs(research): add Submission Cover Letter template (#415)
Mar 26, 2026
9a89feb
docs(research): update research index to v12.9 (#415)
Mar 26, 2026
471d1d6
feat(hslm): Add trit-wise attention weights (#415)
Mar 26, 2026
5486f01
docs(research): add Press Release template (#415)
Mar 26, 2026
d3ade77
docs(research): update research index to v13.0 (#415)
Mar 26, 2026
cd0e08e
docs(research): Extended Session final comprehensive report (#415)
Mar 26, 2026
2af00a3
docs(research): update research index to v13.1 (#415)
Mar 26, 2026
1293480
feat(hslm): trit-wise attention weights (ISSUE-415)
Mar 26, 2026
8e5c12d
docs(research): add Video Presentation Script template (#415)
Mar 26, 2026
93648a2
docs(research): final research index update to v13.2 (#415)
Mar 26, 2026
9ca907c
feat(contracts): Foundry tests v3.1 for TrinityVault (ISSUE-415)
Mar 26, 2026
75e2711
fix(test): add untracked test files to commit (#415)
Mar 26, 2026
c3a82f6
docs(research): add Zenodo Bundle Enhanced Format Guide (#415)
Mar 26, 2026
7e38bd0
docs(research): add Scientific Abstract Writing Template (#415)
Mar 26, 2026
1145dcb
refactor(storm): wave_executor system fixes (#415)
Mar 26, 2026
da4de01
docs(research): add Zenodo v5.2 improvement analysis (#415)
Mar 26, 2026
dbfdcad
fix(queen): Zig 0.15 atomicFile API compatibility (#415)
Mar 26, 2026
b9699f7
fix(queen/queen): Zig 0.15 compatibility (ISSUE-415)
Mar 26, 2026
98aa1a5
feat(queen): add infinite daemon loop with 60s heartbeat (#415)
Mar 26, 2026
1a32ec4
feat(hslm): Consciousness-Aware LR extension (ISSUE-415)
Mar 26, 2026
acd7e9e
fix(build): use inline module for staking tests (#415)
Mar 26, 2026
ab4ff28
fix(doctor): add Queen liveness validation (#415)
Mar 26, 2026
6a2d240
fix(shard): disk persistence test after compression (#433)
Mar 26, 2026
b4ea0f4
fix(queen): Zig 0.15 getpid() API change (#433)
Mar 26, 2026
08cff5a
feat(vsa): Stage 1.0 full template codegen (#433)
Mar 26, 2026
01c331e
fix(vibeec): update tri_to_zig codegen to Stage 1.0
Mar 26, 2026
e9a6c54
feat(vsa): TTT Dogfood Stage 1.0 — switch to generated implementations
Mar 26, 2026
0929e00
docs(integration): add TRI-27 + Queen + FPGA integration examples (#433)
Mar 26, 2026
7c2ea8a
docs(tri27): add user guide with assembly tutorial (#433)
Mar 26, 2026
b73c471
docs(brain): add Queen PFC architecture documentation #433
Mar 26, 2026
16a8750
feat(kaggle): add DeepMind AGI hackathon submission notebook #433
Mar 26, 2026
a056e12
merge: feat/issue-411-linear-types-ownership to main
Mar 26, 2026
d68affd
docs(research): add Paper 001 - Ternary Neural Networks with φ-optimi…
Mar 26, 2026
327c00f
docs(research): add statistical validation framework 2026 (#433)
Mar 26, 2026
7f71b16
docs(research): add Paper 002 - TRI-27 FPGA Architecture (#433)
Mar 26, 2026
084c3cf
docs(research): add Paper 003 - VSA with Ternary Hyperdimensional Com…
Mar 26, 2026
3f22141
docs(zenodo): v6.1 Phase 4: mathematical foundations (#433)
Mar 26, 2026
c14466c
docs(submissions): add DARPA CLARA technical narrative (#433)
Mar 26, 2026
dff9629
docs(zenodo): v6.1 Phase 4 extended: full mathematical derivations (#…
Mar 26, 2026
fe0d69d
docs(research): add Autonomous Cycle Implementation Guide (#433)
Mar 26, 2026
238fe90
docs(zenodo): v6.1 checklist for NeurIPS 2026 (#433)
Mar 26, 2026
8e02f7e
docs(submissions): NeurIPS 2026 paper draft + statistical validation …
Mar 26, 2026
6d6907e
fix(vsa): revert usingnamespace to explicit exports (#433)
Mar 26, 2026
bf8ac0d
docs(zenodo): v6.1 Jupyter notebooks and upload summary (#433)
Mar 26, 2026
63ebe9b
docs(zenodo): v6.1 completion report with inventory (#433)
Mar 26, 2026
32efc41
docs(zenodo): v6.1 figure generation guide without Python (#433)
Mar 26, 2026
2e5ad63
docs(zenodo): v6.1 step-by-step upload guide (#433)
Mar 26, 2026
0522ddf
docs(research): v6.1 comprehensive science index (#433)
Mar 26, 2026
9d12baa
docs(zenodo): v6.1 LaTeX algorithm boxes for papers (#433)
Mar 26, 2026
15eaf54
docs(zenodo): v6.1 comprehensive release notes (#433)
Mar 26, 2026
ead0312
docs(zenodo): v6.1 comprehensive README for Zenodo collection (#433)
Mar 26, 2026
1e3be54
docs(zenodo): v6.1 master summary - complete documentation inventory …
Mar 26, 2026
52a6499
docs(zenodo): v6.1 technical deep-dive - consciousness gate + VSA att…
Mar 26, 2026
313e8f1
fix(figures): Zenodo figure generation fixes - Fixed FancyBboxPatch A…
Mar 26, 2026
a914c41
docs(zenodo): v6.1 final complete checklist - ready for upload (#433)
Mar 26, 2026
d2c38a6
docs(research): Zenodo scientific patterns comprehensive guide v1.0 -…
Mar 26, 2026
0ecb239
docs(research): Zenodo v6.1 upload automation guide - Complete workfl…
Mar 26, 2026
ec18390
docs(research): HSLM improvement proposals v1.0 - 8 evidence-based im…
Mar 26, 2026
e8ddd14
docs(zenodo): v6.1 VSA architecture documentation for B007 (#433)
Mar 26, 2026
6aec203
fix(hslm): sacred attention adaptive scale compilation errors (#433)
Mar 26, 2026
96f2b96
docs(research): theoretical framework v6.0 - category theory and VSA …
Mar 26, 2026
9b748aa
docs(research): experimental results v1 - comparative analysis (#433)
Mar 26, 2026
30a8439
docs(research): comprehensive bibliography v2.0 (#433)
Mar 26, 2026
fba5816
docs(research): Zenodo publication best practices v3.0 (#433)
Mar 26, 2026
4a4376c
docs(research): HSLM adaptive sacred scaling implementation - Added a…
Mar 26, 2026
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# Anti-Idle Rules — Autonomous Cycle Guardrails

## ⛔ Filesystem Safety

- **ЗАПРЕЩЕНО** делать `rm -rf .zig-cache/o` или частичное удаление кэша
- Если нужно очистить кэш: **ТОЛЬКО** `rm -rf .zig-cache && rm -rf zig-out` (полностью)
- После очистки кэша: сначала `zig build l0`, потом `zig build l1`, потом остальное
- **ЗАПРЕЩЕНО** запускать `zig build` больше 2 раз подряд на одну и ту же ошибку
- Если билд падает 2 раза с одной ошибкой → запиши в HIVELOG и **СТОП**

## 🔄 No-Spin Rule

- **ЗАПРЕЩЕНО** бесконечно повторять одни и те же проверки без прогресса
- Если 3 цикла подряд нет новых коммитов → **СТОП** и сообщить статус
- Если все задачи выполнены → сообщить "ALL TASKS COMPLETE" и ждать новых инструкций

## 📋 Task Progress Rule

- Каждая задача должна иметь конкретный чекбокс: `[ ]`
- После выполнения `[ ]` → `[x]` → коммит
- Не переходить к следующей задаче пока текущая не закоммичена
- Если задача блокирована → записать в HIVELOG и ждать

## 🚨 Error Logging

При любой ошибке:
1. Записать в HIVELOG.md: `[ERROR] timestamp: описание`
2. Полный stderr в `.autonomous/errors/<timestamp>.log`
3. Не повторять ошибочное действие больше 2 раз

## ✅ Success Pattern

```
[ ] Task name
├─ zig build → PASS/FAIL
├─ zig test → PASS/FAIL
├─ zig fmt → DONE
├─ git commit → DONE
└─ [x] COMPLETE
```

φ² + 1/φ² = 3 | TRINITY
132 changes: 132 additions & 0 deletions .autonomous/COLONY_STATUS.md
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# COLONY STATUS

> Агрегированное состояние колонии — обновляется Queen/Doctor (L1)
> Last update: 2026-03-25T09:45:00Z

---

## L0 Temple (Sacred Core)

| Слой | Статус | Описание |
|------|--------|----------|
| TTT (src/temple/**) | ✅ PROTECTED | Священный слой, агенты не трогают |
| sacred_math.zig | ✅ OK | φ² + 1/φ² = 3 |
| tri27_core.zig | ✅ OK | TRI-27 ISA, Memory, Opcodes |
| tri_lang_core.zig | ✅ OK | Result, Patterns, Linear, Effects |

**Инвариант**: `zig build temple` всегда компилируется.

---

## L1 Queens (Supervisors)

| Модуль | Статус | Описание |
|--------|--------|----------|
| tri_commands | ✅ OK | Диспетчеризация команд |
| queen_trinity | ✅ OK | Queen UI coordination |
| github_commands | ✅ OK | Git/GitHub integration |
| dev_commands | ✅ OK | Dev workflow (TDGS) |
| doctor | ✅ OK | Health checks + healer |

**Инвариант**: `zig build queens` всегда компилируется.

---

## L2 Workers (Optional)

### Core Workers

| Worker | Статус | Описание |
|--------|--------|----------|
| tri_farm | ✅ OK | Railway training farm (152 workers) |
| tri_cloud | ✅ OK | Cloud orchestration |
| tri_fpga | ✅ OK | FPGA synthesis + UART |

---

### FPGA (L2 Worker: tri_fpga)

| Метрика | Значение |
|---------|----------|
| Компиляция | ✅ Zig 0.15 OK |
| Remote Synth | ⏳ Fly.io SLOW (job queued >2 min) |
| J2 UART XDC | ✅ D26/E26 (Bank 15) — Verified |
| Verilog RTL | ✅ D26/E26 (uart_tx/uart_rx) — Verified |
| Bitstream | ⚠️ СТАРЫЙ (Mar 25 01:13, ДО исправления XDC) |
| nextpnr-xilinx | ❌ Не собран — P&R невозможен |
| Yosys synth | ✅ JSON создан (72 LC) |
| UART Test | ❌ TIMEOUT — новый bitstream с D26/E26 прошит, но нет ответа |

**Fly.io Remote Synth Status:**
- Job ID: `18921a50` — queued >2 min
- Service: Health OK, но synthesis очень медленный
- Причина: Worker спит и нуждается в размывке (~30 сек)

**Проблема диагностирована:**
- ✅ nextpnr-xilinx собран локально (xc7a100t chipdb)
- ✅ P&R завершён с правильными D26/E26 пинами
- ✅ Bitstream сгенерирован (3.8 MB, Mar 25 13:08)
- ✅ Bitstream прошит в FPGA
- ❌ UART test timeout — нет ответа от FPGA

**Требуется проверка:**
1. Физическая разводка — FT232RL подключён к J2 pin 5 (D26) и pin 6 (E26)?
2. Возможно провода идут на K20/L20 (старые пины) вместо D26/E26
3. Нужна мультиметром прозвонка J2 → FT232RL подключения

**Доступные команды:**
```bash
tri fpga status # Проверка инструментов и кабеля
tri fpga remote-synth # Синтез через Fly.io API
tri fpga download-uart-bit # Скачать .bit с Fly.io
tri fpga build-uart # Локальный синтез (если есть toolchain)
tri fpga flash-uart # Прошивка через flash_no_sudo.sh
tri fpga uart-test # PING/PONG/echo по J2
```

---

### Spec Tools

| Worker | Статус | Описание |
|--------|--------|----------|
| tri_spec_audit | ✅ OK | .tri spec linting |
| tri_spec_apply | ✅ OK | .tri → Zig/Verilog codegen |
| tri_spec_command | ✅ OK | CLI wrapper |

---

## Graceful Degradation

| Build Target | Статус | Описание |
|--------------|--------|----------|
| `zig build temple` | ✅ OK | L0 только (sacred core) |
| `zig build queens` | ✅ OK | L1 (supervisors) |
| `zig build tri` | ✅ OK | L2 (all workers) |

**При сбое worker-а**: L0 + L1 остаются работоспособными, degraded mode показывает альтернативы.

---

## Active Tasks (TDGS)

| Task ID | Фаза | Агент | Прогресс |
|---------|------|-------|----------|
| TDGS-1 | ✅ DONE | — | Все три слоя «guarded» |
| TDGS-2 | 🔄 IN_PROGRESS | agent:coder | L1 Queens migration |
| TDGS-3 | ⏸️ QUEUED | — | L2 Workers graceful degradation |

---

## Health Score

```
Overall: 85/100 (RECOVERING)

L0 (Temple): ████████████████████ 100/100
L1 (Queens): ███████████████████░░ 90/100
L2 (Workers): ████████████████░░░░░░ 75/100
```

**Блокеры**: FPGA UART communication (needs debug)
**Риски**: UART PING timeout — FPGA не отвечает, нужна диагностика bitstream/пинов/reset
70 changes: 70 additions & 0 deletions .autonomous/HIVELOG.md
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# 🐝 Multi-Agent Coordination — HIVELOG

Все агенты делят репозиторий и видят действия друг друга через общий рой-лог.

## Формат строки

```
2026-03-25T02:44:00Z | agent:claude-opus | task:TDGS-3 | scope:tri27.coptic | action:"created src/tri27/coptic.zig enum" | commit:pending
```

## Правила

1. **В начале КАЖДОГО цикла:**
- прочитать последние 20 строк HIVELOG.md
- НЕ делать то, что недавно сделал другой агент в том же scope

2. **Перед КАЖДЫМ коммитом:**
- добавить строку в HIVELOG.md с:
- ISO-временем (`date -u +%Y-%m-%dT%H:%M:%SZ`)
- agent:<NAME_OR_ID>
- task:TDGS-X или tri:dev-YYY
- scope (директория/подсистема)
- кратким action
- commit hash (если есть)

3. **Local Task Progress:**
- `.autonomous/<TASK_ID>/progress.md` — единый для всех агентов на задаче
- перед работой: прочитать progress.md, выбрать первый незакрытый шаг
- после работы: обновить progress.md

4. **Запрет на пересечения:**
- Один TDGS/tri:dev issue — по умолчанию один coding-агент
- Если два агента работают над одним TASK_ID:
- второй агент НЕ меняет код, а гоняет тесты/улучшает документацию

## Пример

```bash
# В начале цикла
tail -20 .autonomous/HIVELOG.md

# Перед коммитом
echo "$(date -u +%Y-%m-%dT%H:%M:%SZ) | agent:claude-opus | task:TDGS-3 | scope:tri27.coptic | action:\"created coptic enum\" | commit:pending" >> .autonomous/HIVELOG.md
```
2026-03-24T20:14:08Z | agent:claude-opus | task:TDGS-3 | scope:tri27.coptic | action:"created coptic.zig enum with 26 registers + bank model" | commit:402cec4551
2026-03-24T20:18:34Z | agent:claude-opus | task:TDGS-3 | scope:tri27.asm_parser | action:"lexer recognizes Coptic names as Register tokens" | commit:0a55229623
[INFO] 2026-03-25 09:35:05: Created ANTI_IDLE.md with filesystem safety rules
[OK] 2026-03-25 10:03:49: Fixed result_type.zig for Zig 0.15 - 8/8 tests passing, committed to #410
[OK] 2026-03-25 10:24:42: Wave2 Step1 progress - added match() and TRI-27 lowering to Result type, 12/12 tests, 2 commits to #410
2026-03-25T04:20:58Z | agent:claude-opus | task:TRI27-encoding | scope:executor.zig,tri_asm.zig | action:"Simplified JGT/JLT encoding to use dst field" | commit:c36ed7a4ad
2026-03-25T04:23:21Z | agent:claude-opus | task:autonomous-loop | scope:cycle-status | action:"Build verification: L0✅ L1✅ tri✅, all core tests passing" | commit:none
2026-03-25T12:00:00Z | agent:claude-opus | task:TDGS-3 | scope:wave1,wave2 | action:"Wave1 COMPLETE, created Wave2 checklist (type-system + emit_t27)" | commit:6e533339a1
2026-03-25T04:34:10Z | agent:claude-opus | task:tri-lang-compat | scope:tri-lang | action:"Fixed Zig 0.15 compatibility issues" | commit:pending
2026-03-25T04:36:36Z | agent:claude-opus | task:TDGS-3 | scope:tri-lang.parser | action:"Fixed Zig 0.15 defer compatibility in parsePrimaryExpr" | commit:004ba8e227
2026-03-25T04:43:08Z | agent:claude-opus | task:TDGS-3 | scope:tri-lang.types | action:"Created Wave 2 Type System Core (Hindley-Milner)" | commit:7702517c48
2026-03-25T04:45:49Z | agent:claude-opus | task:TDGS-3 | scope:tests.tri27 | action:"Added reticular_raphe expected output test" | commit:f6e11b810c
2026-03-25T04:49:36Z | agent:claude-opus | task:TDGS-3 | scope:zig-0.15-compat | action:"Fixed std.sort.sort, std.log.scoped across storm/bsd modules" | commit:c601b5a7c9
2026-03-25T04:49:38Z | agent:claude-opus | task:TDGS-3 | scope:wave2,types | action:"Wave2 checklist created, types.zig blocked by Zig 0.15 ArrayList API issue" | commit:none
2026-03-25T05:03:19Z | agent:claude-opus | task:TDGS-3 | scope:tri_depin | action:"Fixed BrainRegion enum + format args, tri build green" | commit:3a6ba1109c
2026-03-25T05:04:29Z | agent:claude-opus | task:TDGS-3 | scope:firebird,tri27 | action:"Added app_state, reputation modules, tri27/depin README" | commit:c7b4c1d6d9
2026-03-25T05:07:47Z | agent:claude-opus | task:TDGS-3 | scope:build,firebird | action:"Fixed module imports, added firebird modules to build.zig" | commit:ecab057522
2026-03-25T05:13:17Z | agent:claude-opus | task:TDGS-3 | scope:firebird,build | action:"Added firebird modules to build.zig, fixed app_state tests" | commit:ecab057522
2026-03-25T05:14:39Z | agent:claude-opus | task:TDGS-3 | scope:firebird | action:"Fixed reputation health float, staking MIN_STAKE refactor" | commit:d85dc3c887
2026-03-25T05:25:56Z | agent:claude-opus | task:TDGS-3 | scope:types,zig-0.15 | action:"Fixed ArrayList API, Wave2 Phase 1.1 COMPLETE" | commit:a81b053e7a
2026-03-25T05:29:15Z | agent:claude-opus | task:TDGS-3 | scope:tri-lang.types | action:"Fixed Zig 0.15 ArrayList API - use Managed for allocator storage" | commit:94aaa4dfd2
2026-03-25T05:31:01Z | agent:claude-opus | task:TDGS-3 | scope:wave2 | action:"Phase 1.1 COMPLETE, documented Zig 0.15 solution" | commit:197f06e341
2026-03-25T14:50:00Z | agent:claude-opus | task:TDGS-3 | scope:wave2 | action:"TDGS-3 Wave 2 COMPLETE - Type System + emit_t27 (~2500 LOC, 70+ tests)" | commit:a556bd6708
2026-03-25T16:20:00Z | agent:claude-opus | task:TDGS-3 | scope:ir,emit_t27 | action:"Fixed Zig 0.15 ArrayList API in ir.zig, IR→TRI-27 converter complete (20/20 tests)" | commit:df415a0e66
2026-03-25T16:40:00Z | agent:claude-opus | task:TDGS-3 | scope:pipeline | action:"Created example .tri modules + documented pipeline status. IR→TRI-27 complete, VIBEE→IR bridge pending" | commit:1e35f7655d
2026-03-25T17:00:00Z | agent:claude-opus | task:TDGS-3 | scope:vibeec,spec_to_ir | action:"Created spec_to_ir.zig - VIBEE spec → IR Module converter (143 LOC, 9/9 tests)" | commit:fc364d66e5
30 changes: 30 additions & 0 deletions .autonomous/MOVED.md
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# .autonomous/ — MOVED

> **Status**: Scratchpad only — NOT source of truth

All governance and logs have moved to `.trinity/`:

| Old Path | New Path | Purpose |
|----------|----------|---------|
| `.autonomous/HIVELOG.md` | `.trinity/queen/HIVELOG.md` | Master swarm log |
| `.autonomous/tdgs3-progress.md` | `.trinity/hippocampus/tdgs3-progress.md` | TDGS tracking |
| N/A | `.trinity/agents/{ZONE}/HIVELOG.md` | Per-agent logs |
| N/A | `.trinity/thalamus/agent_reports/` | Structured JSON reports |

## What Remains Here

- Temporary scratch files (safe to delete)
- Agent workspace directories (issue-specific)
- Development artifacts

## Single Source of Truth

All truth lives in `.trinity/**`:
- `.trinity/queen/HIVELOG.md` — Consolidated swarm log
- `.trinity/agents/{ZONE}/HIVELOG.md` — Per-agent detailed logs
- `.trinity/thalamus/agent_reports/*.json` — Structured reports
- `.trinity/hippocampus/` — Long-term memory

---
*Created: 2026-03-25*
*Reason: NA-R11 Alphabet Canon 27 + Queen-Agent Bridge*
101 changes: 101 additions & 0 deletions .autonomous/issue-386/progress.md
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## Task: Issue #386 — Golden Float & Ternary Float: GF16 + TF3-9 Format

**Status**: IN PROGRESS ⏳ (Phases 1-2 Complete, Phase 3-4 Pending)

**Completed Steps:**

### ✅ Phase 1: Format Definitions (Complete)

**File:** `src/hslm/intraparietal_sulcus.zig`

- [x] GF16 struct (GoldenFloat16 = packed struct(u16))
- 1 sign bit + 6 exp + 9 mant
- exp:mant = 6:9 = 0.667 (95.1% golden)

- [x] TF3-9 struct (TernaryFloat9 = packed struct(u18))
- 1 sign trit + 3 exp trits + 5 mant trits
- exp:mant = 3:5 = 0.6 (98.2% golden - BEST FORMAT!)

- [x] Conversion functions:
- gf16FromF32(val: f32) GoldenFloat16
- gf16ToF32(g: GoldenFloat16) f32
- tf3FromF32(val: f32) TernaryFloat9
- tf3ToF32(t: TernaryFloat9) f32

- [x] Slice conversions:
- f32ToGf16Slice, gf16ToF32Slice
- f32ToTf3Slice, tf3ToF32Slice

- [x] Tests: 10/10 passing
- gf16 roundtrip basic, special values, dynamic range
- tf3 roundtrip basic, trit encoding
- golden distance tests
- slice conversion tests

**Note:** Arithmetic (add, mul, sqrt) via f32 conversion (acceptable for Phase 1, native HW in Phase 4)

### ✅ Phase 2: Integration with HSLM (Mostly Complete)

**Files:**
- `src/hslm/orbitofrontal_value.zig` - Format selection logic
- `src/hslm/angular_gyrus.zig` - Format introspection, φ-distance

- [x] FormatType enum: FP32, FP16, FP8, BF16, **GF16**, **TF3_9**, TF32

- [x] Format selection functions:
- selectOptimalFormat(stats) → prefers GF16/TF3 based on sparsity, variance
- selectFormatBySensor(sensor_id, stats) → sensor-specific format mapping

- [x] Format metadata:
- bits(), expBits(), mantBits()
- φ-distance calculations
- formatTypeToString(), describeFormat()

- [x] Sensor mapping:
- Farm PPL → GF16
- Arena battles → TF3_9
- Tests rate → FP32
- Ouroboros score → GF16

- [ ] HSLM training integration:
- [ ] Add format option to hslm_train.zig
- [ ] Quantization pipeline: f32 → GF16/TF3-9
- [ ] Dequantization: GF16/TF3-9 → f32
- [ ] Memory layout optimization

### ⏳ Phase 3: Benchmark Comparison (Pending)

- [ ] Run HSLM training with: FP16, BF16, GF16, TF3-9
- [ ] Compare: final PPL, training speed, memory usage
- [ ] Analyze: layer-wise precision sensitivity

**Target metrics:**
| Format | exp:mant | φ-distance | Bits | Target PPL | Speedup |
|--------|----------|------------|------|------------|---------|
| FP16 | 5:10=0.5 | 0.118 | 16 | - | - |
| BF16 | 8:7=1.14 | 0.522 | 16 | baseline | - |
| GF16 | 6:9=0.667| 0.049 | 16 | ≤ BF16 | 2× |
| TF3-9 | 3:5=0.6 | 0.018 | 18 | ≤ BF16 | 2× |

### ⏳ Phase 4: Hardware Prototype (Covered by #392)

See issue #392 for FPGA ALU implementation.

## Summary

**Complete:**
- Phase 1: Format definitions ✅ (10/10 tests passing)
- Phase 2: Format selection logic ✅ (orbitofrontal_value, angular_gyrus)

**Remaining:**
- Phase 2: HSLM training integration (quantization/dequantization in trainer)
- Phase 3: Benchmark comparison
- Phase 4: FPGA ALU (issue #392)

**Build Status:**
- L0 ✅ (Temple)
- L1 ✅ (Queens)
- HSLM tests ✅ (10/10 passing)

**Last Update:** 2026-03-25T10:45
**Comment Posted:** https://github.com/gHashTag/trinity/issues/386#issuecomment-4122978863
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