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@gbouras13 gbouras13 released this 16 Mar 07:14
· 62 commits to main since this release
v0.1.0
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Learn about vigilant mode.
  • Changes to Baktfold database hosting - now on HuggingFace so should be much much faster by default to download
  • Introduction of baktfold convert-prokka for automatically converting a Prokka GenBank to the required Bakta JSON format
  • If you have a prokaryotic genome annotated with other methods, we recommend genbank_to for non-Bakta GenBank conversion to Bakta JSON format
  • Experimental support for eukaryotes
    • Via baktfold convert-euk for automatically converting a eukaryotic GenBank to the required Bakta JSON format
    • Then pass the --euk flag with baktfold run
  • All eukaryote CDS features should be annotated - the glue-code and standards compliance support for other genomic features is not guaranteed.
    • Please try it out and reach out if you have any feedback
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