v0.13.0

• Adds --circular_chromosome flag.
• Hybracter's default behaviour (without --circular_chromosome) is that contigs that are only longer than the minimum chromosome length are marked as complete chromosome (noting that any linear contigs above the length threshold are still polished and included in the final assembly as chromosomes, but are not reoriented by Dnaapler). This is to ensure Hybracter can support bacteria with linear chromosomes.
• From v0.13.0, you can now specify --circular_chromosome to ensure that a sample is only classified as complete if a contig is both above the minimum chromosome length and marked as circular by Flye - it recommended now for users who know their input bacterial genome should have circular chromosome(s).
• Thanks to Ryan Wick for advice and Anna Sheppard for advice and for flagging this
• Various other bugfixes
• Automated container builds hosted at https://quay.io/repository/gbouras13/hybracter?tab=tags latest