Trace profiles#2
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…ve ratio - Changed summary stat to show actual match probability for most likely donor instead of always displaying "100%" - Format relative ratio percentages to 1 decimal place instead of 4 for cleaner presentation Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Moved data editor rendering before TRACE button to capture user edits - Changed TRACE button handler to use edited_df instead of session state - Now preserves all entered values when clicking "Add TRACE Profile" Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
…tion - Added clear section headers with dividers (Configuration, Haplotype Data, Add/Remove, Save/Export) - Organized controls into tabs for better UX (Add Individual, Add TRACE, Remove) - Moved allele format guidelines to an expandable info box - Improved validation error messages with better formatting - Better spacing and reduced visual clutter - Added icons and emojis for better visual cues - Grouped related actions in organized columns - Improved button labels and help text for clarity Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- When adding TRACE profile without uploading a CSV file, now copies the last individual's haplotype data instead of creating empty values - Updated help text to inform users about this behavior - Makes it easier to create TRACE profiles based on existing individuals Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Replaced all use_container_width=True with width='stretch' - Fixes Streamlit deprecation warnings - Preparation for Streamlit API changes after 2025-12-31 Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Added clear page title and description - Organized content into clear sections with headers (Edit, Add, Configure, Actions) - Better visual hierarchy with subsections and containers - Improved button layout and labels with icons - Added success/error messages with emojis for better feedback - Better spacing and reduced clutter - More informative help text and placeholders - Consolidated action buttons into logical groups - Improved overall mutation rate display with marker count - Used width='stretch' instead of deprecated use_container_width Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Fixed KeyError when accessing software settings page directly without visiting home page first - Added proper initialization of global_config with fallback to ConfigParser - Redesigned page with improved visual hierarchy and clear sections - Added page title and description - Organized settings in 2-column layout for better space usage - Added icons and emojis for better visual cues - Improved save section with clear messaging - Better spacing and reduced clutter Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Added clear page title and welcome section for new users - Reorganized sidebar with section headers (Upload Files, Load Previous, Example Files) - Improved file upload section with shorter labels and better help text - Added icons and emojis throughout for better visual cues - Better organized simulation configuration with section headers - Improved simulation parameters layout and labels - Enhanced execution mode section with clearer messaging - Better button labels with icons (Start Simulation, Stop Simulation, New Simulation) - Improved success/error/info messages with emojis and bold formatting - Fixed deprecated use_container_width -> width='stretch' - Better spacing and reduced clutter throughout - Cleaner config loading feedback messages - More concise and professional messaging overall Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Added clear page title and description - Organized sidebar into sections (Add, Remove, Save) - Added welcome section with instructions for new users - Better visual hierarchy with section headers and dividers - Added icons and emojis throughout for better visual cues - Improved button labels with icons and width='stretch' - Better success/error messages with emojis - Added pedigree visualization section with individual count - Included helpful tips in 3-column layout - Better placeholders and help text for inputs - More intuitive user flow with clearer instructions - Fixed global_config initialization with fallback Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add results/ directory to gitignore (simulation outputs) - Add examples/ directory to gitignore (managed separately) - Prevents local results and examples from being pushed to remote Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Removed all files from results/ directory (simulation outputs) - Removed all files from examples/ directory (will be managed separately) - These directories are now in .gitignore and won't be tracked - Local directories remain intact Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Created Dockerfile.cli for running MatchY via command-line interface in Docker. Updated README.md to document both GUI and CLI Docker images, and clarified that local installation is Linux-only. Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add badges/shields to README.md (license, Python version, Docker, issues, stars) - Expand README with table of contents, features section, quick start guide - Add comprehensive documentation, citation, and support sections - Create GitHub issue templates (bug report, feature request, question) - Add pull request template with detailed checklist Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
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