Include utilities namespace wherever necessary

[gassmoeller]

This PR fixes an issue that appeared in #6215: Not all of ASPECT's namespaces named Utilities contain a directive using namespace dealii::Utilities. This can lead to hard to understand error messages like that Utilities::MPI:... cannot be found, even if the ASPECT file in question was not changed at all (e.g. because it was grouped into a different unity build file that contained a new Utilities namespace). This PR introduces using namespace dealii::Utilities into every file that introduces an Utility namespace.

[gassmoeller]

I introduced a change after noticing a problem in #6215: There are two separate cases:

1. Every header that adds something to aspect::Utilities needs to make sure dealii::Utilities is included-
2. Every header that introduces a new namespace named Utilities needs to make sure the namespace aspect::Utilities is included.

My previous solution of simply including dealii::Utilities in both cases above would not make the aspect specific functions in aspect::Utilities available.

I updated the code and added a comment to make sure this logic is documented.

The logic for all symbols in the Utilities namespaces now look approximately like this:

dealii::Utilities -> aspect::Utilitiies -> aspect::specific_namespace::Utilities 

Not the prettiest solution, but at least this way we should avoid all future problems with these namespaces. The alternative was to specify for each use of Utilities::... if it was part of aspect or deal.II (I checked there are ~1300 cases XD).

@tjhei: Can you take another look? Sorry we overlapped with your review and my modification.

[tjhei]

Maybe we should get rid of the aspect::bla::Utilities namespaces. I find that quite confusing.

[gassmoeller]

Maybe we should get rid of the aspect::bla::Utilities namespaces. I find that quite confusing.

We could, I wouldnt be opposed to it. The material model already uses aspect::MaterialModel::MaterialUtilities, which prevents confusion.