🤖 Optimize workflow disabling in trial command

[dsyme]

Summary

• Moved workflow disabling logic earlier in the RunWorkflowTrials function
• Improved error handling and temporary directory management for workflow disabling
• Simplified workflow disabling process in clone-repo mode

Changes

• Relocated workflow disabling step to occur before trial execution
• Added separate temporary directory clone for workflow disabling
• Maintained existing warning-level error handling for non-critical workflow disabling failures

[Copilot]

Pull Request Overview

This pull request optimizes the trial command by moving the workflow disabling logic earlier in the execution flow, from inside the runAllTrials function to before it. This ensures workflows are disabled only once rather than per trial iteration when using --repeat.

Key Changes

• Workflow disabling now occurs at Step 2.8, immediately after cloning repository contents (Step 2.7)
• A separate temporary directory clone (tempDirForDisable) is created specifically for the workflow disabling operation
• Error handling maintains the existing warning-level approach for non-critical failures

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