Avoid prompting for upgrades when they wouldn't be prompted.

[alexet]

We prompt for destructive upgrades once at the start of running multiple queries so the user doesn't get repeated prompts but with non-destructive they wouldn't any way and it would be worse. This also moves the version check to live with all the other version checks.

I pulled this out of #1498 because it isn't directly related.

Checklist

• CHANGELOG.md has been updated to incorporate all user visible changes made by this pull request.
• Issues have been created for any UI or other user-facing changes made by this pull request.
• [Maintainers only] If this pull request makes user-facing changes that require documentation changes, open a corresponding docs pull request in the github/codeql repo and add the ready-for-doc-review label there.

[aeisenberg]

Thanks! A nice little cleanup.