Organize and clean project structure

README.md

@@ -530,7 +530,7 @@ The system supports Retrieval-Augmented Generation (RAG) for enhanced knowledge
 The easiest way to use the AI Development Agent is through the Streamlit web interface:
 
 ```bash
-streamlit run streamlit_app.py
+streamlit run apps/streamlit_app.py
 ```
 
 This will start the web application at `http://localhost:8501` where you can:
@@ -736,7 +736,9 @@ ai-dev-agent/
 ├── prompts/              # Prompt management
 │   ├── agent_prompt_loader.py # Agent prompt loading system
 │   └── __init__.py       # Prompt module initialization
-├── streamlit_app.py      # Streamlit web interface
+├── apps/
+│   ├── streamlit_app.py      # Main Streamlit web interface
+│   └── prompt_manager_app.py # Prompt management interface
 ├── main.py              # Main application entry point
 ├── requirements.txt     # Python dependencies
 ├── secrets.toml        # API keys and secrets (create this)

apps/__init__.py

@@ -0,0 +1,10 @@
+"""
+Applications package for AI Development Agent.
+
+This package contains the user interface applications:
+- streamlit_app.py: Main AI Development Agent interface
+- prompt_manager_app.py: Prompt and RAG document management interface
+"""
+
+__version__ = "1.0.0"
+__author__ = "AI Development Agent Team"

TEST_ORGANIZATION_SUMMARY.md → tests/TEST_ORGANIZATION_SUMMARY.md

@@ -93,21 +93,21 @@ python tests/organize_tests.py --generate-index
 
 ### 2. Setup Script
 
-**File**: `scripts/setup_test_environment.py`
+**File**: `tests/setup_test_environment.py`
 
 **Commands**:
 ```bash
 # Setup complete test environment
-python scripts/setup_test_environment.py --setup
+python tests/setup_test_environment.py --setup
 
 # Validate test organization
-python scripts/setup_test_environment.py --validate
+python tests/setup_test_environment.py --validate
 
 # Run all tests
-python scripts/setup_test_environment.py --run-tests
+python tests/setup_test_environment.py --run-tests
 
 # Show help
-python scripts/setup_test_environment.py --help-info
+python tests/setup_test_environment.py --help-info
 ```
 
 ### 3. Pytest Configuration
@@ -213,7 +213,7 @@ The following files are **explicitly excluded** from the test organization rule:
 
 1. **Setup test environment**:
    ```bash
-   python scripts/setup_test_environment.py --setup
+   python tests/setup_test_environment.py --setup
    ```
 
 2. **Read the rules**:
@@ -249,7 +249,7 @@ The following files are **explicitly excluded** from the test organization rule:
 
 - **Detailed Rules**: `tests/TEST_ORGANIZATION_RULES.md`
 - **Test Index**: `tests/TEST_INDEX.md` (auto-generated)
-- **Setup Help**: `python scripts/setup_test_environment.py --help-info`
+- **Setup Help**: `python tests/setup_test_environment.py --help-info`
 - **Validation**: `python tests/organize_tests.py --validate`
 
 ## Conclusion

scripts/setup_test_environment.py → tests/setup_test_environment.py

@@ -155,7 +155,7 @@ def show_test_help(self):
 - tests/security/ - Security and vulnerability tests
 
 Commands:
-- python scripts/setup_test_environment.py --setup
+- python tests/setup_test_environment.py --setup
 - python tests/organize_tests.py --validate
 - python tests/organize_tests.py --create-structure
 - pytest tests/ --cov=. --cov-report=html