qlint

Sanity checker for PBS torque job files

Problems signalled

Errors:

• Non-unix line endings
• Non-ASCII charactersa in PBS file
• Invalid values for join (-j)
• Invalid values for keep (-k)
• Invalid values for mail event (-m)
• Malformed job name (-N)
• Malformed project name (-A)
• Invalid walltime format (-l walltime=...)
• Non-numerical ppn, procs, or gpus specification
• Invalid memory and process memory specification
• Multpile procs resource specifications
• Memory resources not available for combination of nodes, ppn, and pmem
• Memory resources not available for combinatino of nodes and mem
• Unknown partition specified
• Unknown QOS specified
• Number of nodes requested too large in partition
• ppn too large

Warnings:

• Missing shebang
• Misplaced shebang
• Space in directive, i.e., '# PBS', rather than '#PBS'
• PBS directives after first script statement
• Missing script
• Invalid mail addresses (-M)
• Unknown resource specication (-l)
• Memory specification for pmem and mem not consistent

Dependencies

• https://github.com/gjbex/vsc-tools-lib : the lib directory should be in the PYTHONPATH
• https://github.com/gjbex/vsc-cluster-db/ : required to create a library storing information about the compute cluster