Scripts to make plots and generate lists of variants with different freq compared to gnomAD and having strand ambiguity
This repository is used for QC of individual GWAS summary statistis files in Global Biobank Meta-analysis Initiative. WDL workflows and Google Compute Engine are used for computing. The workflows consist of cleaning/munging input files to the same format and running a meta-analysis.
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Use ./readme and ./Dockerfile to generate the docker image
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The WDL workflow in https://github.com/globalbiobankmeta/META_ANALYSIS/blob/master/wdl/munge_sumstats_beforeQC_obtain_QClist.wdl and https://github.com/globalbiobankmeta/META_ANALYSIS/blob/master/wdl/munge_sumstats_beforeQC_obtain_QClist.json