0.6.5

Features

n/a

Improvements

• allow option to ignore name abbrevations like in gbif-parser so that … …[Taraxacum agg.] is parsed into [Taraxacum]

Example usage:

echo -e "\tTaraxacum agg." \
 | nomer append --include-header gbif-parse \
 | mlr --itsvlite --oxtab cat

producing:

providedExternalId      
providedName            Taraxacum agg.
relationName            SAME_AS
resolvedExternalId      
resolvedName            Taraxacum
resolvedAuthorship      
resolvedRank            genus
resolvedCommonNames     
resolvedPath            Taraxacum
resolvedPathIds         
resolvedPathNames       genus
resolvedPathAuthorships 
resolvedExternalUrl     

whereas, when disabling the ignoring of taxonomic name abbreviations via

echo -e "\tTaraxacum agg." \
 | nomer append \
 --properties <(echo "nomer.parser.gbif.ignoreAbbreviations=false") \
 --include-header \
 gbif-parse \
 | mlr --itsvlite --oxtab cat

produces:

providedExternalId      
providedName            Taraxacum agg.
relationName            SAME_AS
resolvedExternalId      
resolvedName            Taraxacum agg.
resolvedAuthorship      
resolvedRank            species_aggregate
resolvedCommonNames     
resolvedPath            Taraxacum
resolvedPathIds         
resolvedPathNames       genus
resolvedPathAuthorships 
resolvedExternalUrl     

inspired by review notes by @agalassini

Bug Fixes

n/a