General Matlab Code (GenMatCode).
This is collection of the MATLAB code I developed through my research career. Some of those codes were widely used in muplitple research projects, including some of my publication in following papers:
Paulson, A.L., Zhang, L., Prichard, A.M., Singer, A.C. (2024). 40 Hz sensory stimulation enhances CA3-CA1 coordination and prospective coding during navigation in a mouse model of Alzheimer’s disease. bioRxiv preprint.
Zhang, L., Fournier, J., Fallahnezhad, M., Paradis A.L., Rocherfort, C., Rondi-Reig, L. (2023). The cerebellum promotes sequential foraging strategies and contributes to the directional modulation of hippocampal place cells. iScience. 26, 10260.
Zhang, L., Prince, S.M., Paulson, A.L., Singer, A.C. (2022). Goal discrimination in hippocampal non-place cells when place information is ambiguous. Proc. Natl. Acad. Sci. 119 (11), e2107337119.
Zhang, L., Zhao, J., Zhou, Q., Liu, Z., Zhang, Y., Cheng W., Gong W., Hu, X., Lu, W., Bullmore, E. T., Lo, C.Y. Z., Feng, J. (2021). Sensory, somatomotor and internal mentation networks emerge dynamically in the resting brain with internal mentation predominating in older age. NeuroImage. 237, 118188.
Garza, K., Zhang, L., Borron B., Wood L. & Singer, A. C. (2020). Gamma visual stimulation induces neuroimmune signaling distinct from acute neuroinflammation. J Neurosci. 40 (6), 1211–1225.
Zhang, L., Lee, J., Rozell, C. & Singer, A. C. (2019). Sub-second dynamics of theta-gamma coupling in hippocampal CA1. Elife. 8, e44320.
Zhou, Q., Zhang, L., Feng, J. & Lo, C.-Y. Z. (2019). Tracking the main states of dynamic functional connectivity in resting state. Front. Neurosci. 13, 685
Wang, C., Chen, Q., Zhang, L., Xu, J., and Lin, L. (2014). Multi-channel in vivo recording techniques: analysis of phase coupling between spikes and rhythmic oscillations of local field potentials. Acta Physiologica Sinica. 66 (6), 746–755.
Zhang, L., Chen, G., Niu, R., Wei, W., Ma, X., Xu, J., Wang, J., Wang, Z., and Lin, L. (2012). Hippocampal theta-driving cells revealed by Granger causality. Hippocampus 22 (8), 1781–1793.