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@github-actions github-actions released this 22 Sep 02:19
· 35 commits to main since this release
v10.0.0
50a652a
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cmdcolin Colin Diesh
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Learn about vigilant mode.

Bug Fixes

  • Decode CIGAR op lengths of 2^27 and over as unsigned (212c094)
  • Qual is null for a QUAL of * (f90fb25)
  • Reject a record block_size under 32 instead of hanging (c215572)
  • ViewAsPairs returns each mate once (77d4c01)
  • Fill zero linear-index entries so indexCov does not spike (b90f775)
  • End the header text at its first NUL (11c7057)
  • Follow SAMv1 on the long-CIGAR placeholder (c02ee2b)

Documentation

  • Handoff for the 2026-09-21 parsing review (2a42302)
  • Mark the parsing-review handoff implemented (0fe2b50)

Other Changes

Performance Improvements

  • Drop chunks that start past htslib's max_off (82caa34)
  • Bound CSI queries from below by bin loffset (2e94713)

Refactoring

  • Query the index from min, not min - 1 (3217298)

Tests

  • Order corruptRecord imports and drain the stream with Array.fromAsync (0333c71)
  • Check every field and tag of the hts-specs SAM corpus (12b8abb)

Full changelog: v9.0.1...v10.0.0

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