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v2.7.0

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@github-actions github-actions released this 21 Sep 13:10
· 189 commits to main since this release
v2.7.0
c1c1ebb
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cmdcolin Colin Diesh
GPG key ID: A73172047D7555CE
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Learn about vigilant mode.

Other Changes

  • Haplotype-to-haplotype alignments with the bases compared: Subgraph.pairAlignments, --against and --stack (eb73f6e)
  • Chain shared stretches collinearly, and let the bases decide inside a repeat (f64bc26)
  • An inversion survives a flank that runs into it, and a paralog cannot re-claim an earlier record's bases (1c7d5ff)
  • A gap fill chains only the one chain it uses, and a jump that cannot win is not priced (fe6554d)
  • A base aligns in one record, the one scoring higher over the stretch two records share (68edf10)
  • The one-alignment-per-base rule, and README points at haplotype-pair alignments (c1f428b)

Full changelog: v2.6.6...v2.7.0

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