v0.5.0

Webserver

• Website: Added a download button for example data

v0.4.0

Webserver

• Added a /version route
• Update the reference on the website to include a link to the preprint on bioRxiv

v0.3.2

• Fixed a bug regarding the computation of the sequence lengths (only relevant for the coding density in extended/full output)

v0.3.1

• K: 4 -> 9

v0.3.0

• Allow a list of file extensions for input FASTA files (default: fasta,fna,fa)

v0.2.2

• Restrict the default number of threads to the number of CPU cores (fixes exception from the respective numba function)

v0.2.1

• Webserver: Fixed FASTA file check

v0.2.0

Command Line Interface

• Exit with a (hopefully) helpful error message if no input file with the given extension is found in the bin folder (instead of simply crashing)
• Renamed cocopye toolbox into cocopye setup
• For run, download-dependencies and testrun: Allow --pfam24 flag after the subcommand
• Use cocopye_output.csv as default for the -o/--outfile parameter
• Print the location of the currently used configuration file on startup
• Replaced the placeholder description and epilog by real ones

Webserver

• Reenable the submit button after a task stopped with an error
• Use wss for websockets when using an https connection

v0.1.3

• Fixed missing webserver template in the PyPI package

v0.1.2

• Removed argparse dependency