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v0.2.0

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@tomwardio tomwardio released this 02 Apr 16:00

Added

  • Non-zero mean computation to fine-tuning notebook.
  • Gene LFC loss for GenomeTracksHead.
  • Align alternate predictions for splice junctions when making indel
    predictions.

Changed

  • Fix splice-site and splice-site usage scoring to use the correct gene mask
    extractor.
  • Only consider splice sites that are within a gene body, and overlaps with
    the provided variant.
  • Pass requested outputs to the model prediction call, significantly reducing
    roofline memory consumption by eliding redundant computation.
  • Pad gene masks in gene scoring. This reduces the number of jit
    recompilations for different numbers of genes.