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2 changes: 1 addition & 1 deletion pom.xml
Original file line number Diff line number Diff line change
Expand Up @@ -127,7 +127,7 @@
<dependency>
<groupId>com.google.cloud.genomics</groupId>
<artifactId>google-genomics-utils</artifactId>
<version>v1beta2-0.27</version>
<version>v1beta2-0.29</version>
<exclusions>
<!-- Exclude an old version of guava which is being pulled
in by a transitive dependency google-api-client 1.19.0 -->
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This file was deleted.

Original file line number Diff line number Diff line change
Expand Up @@ -20,6 +20,7 @@
import com.google.api.services.storage.Storage.Objects;
import com.google.cloud.dataflow.sdk.transforms.DoFn;
import com.google.cloud.genomics.utils.Contig;
import com.google.cloud.genomics.utils.ReadUtils;
import com.google.common.base.Stopwatch;

import htsjdk.samtools.SAMRecord;
Expand Down Expand Up @@ -118,7 +119,7 @@ void processRecord(SAMRecord record) {
recordsAfterEnd++;
return;
}
c.output(ReadConverter.makeRead(record));
c.output(ReadUtils.makeRead(record));
recordsProcessed++;
}

Expand Down Expand Up @@ -167,7 +168,7 @@ public static Iterable<Read> readSequentiallyForTesting(Objects storageClient, S
recordsAfterEnd++;
continue;
}
reads.add(ReadConverter.makeRead(record));
reads.add(ReadUtils.makeRead(record));
recordsProcessed++;
}
timer.stop();
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This file was deleted.