Feature/agent skills#4
Merged
Merged
Conversation
for more information, see https://pre-commit.ci
…entation Add GloScope_py implementation to patpy; minor updates to GloScope and updated version
Add SPARE metrics
Fix/gloscope_py
for more information, see https://pre-commit.ci
for more information, see https://pre-commit.ci
Co-authored-by: Copilot <copilot@github.com>
Add patpy.tl.condition_utils: multi-condition contrast automation
for more information, see https://pre-commit.ci
Fix pypi integration by removing git dependencies
Add missing docs dependencies
Ignore warnings on building docs
Co-authored-by: Copilot <copilot@github.com>
Add differential expression example to the docs
Adds a markdown skill library (Claude Code per-folder SKILL.md layout) that mirrors the public API surface (pp / tl / pl / datasets), so coding agents can use patpy without rediscovering the API from source each session. Pure additive change: no module behavior is altered. Skills ship with the wheel via the default hatchling include for files under src/patpy/. Co-Authored-By: Claude Opus 4.7 <noreply@anthropic.com>
for more information, see https://pre-commit.ci
Fix KNN score
- Pack patpy skill modules (datasets, preprocessing, sample_representation, supervised_methods, evaluation, plotting) for export to Claude Code, Codex, and BioContext layouts via patpy-export-skills / patpy-export-biocontext - Add patpy.mcp FastMCP server (patpy-skills-mcp console script) exposing dataset_summary, preprocess_dataset, build_representation, evaluate_representation, run_supervised_prediction, generate_plot, simulate_dataset as MCP tools - Add example client configs under examples/mcp/ - Add tests for skill export bundles and MCP tool wrappers - Add [mcp] optional dependency group
# Conflicts: # .gitignore # CHANGELOG.md # README.md # docs/index.md # pyproject.toml # src/patpy/skills/SKILL.md # src/patpy/skills/sample_representation/SKILL.md # src/patpy/skills/supervised_methods/SKILL.md # src/patpy/tl/evaluation.py # tests/test_evaluation.py # tests/test_skills.py
… into feature/agent-skills
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
8 participants
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
No description provided.