Unsupervised clustering

[acavalla]

Hi all,

I'll be working on producing a tutorial on the subject of unsupervised ML/clustering packages. The subtopics I have are as follows:

• PCA (+ scree)
• NMF
• Hierarchical clustering
• Consensus clustering
• tSNE

I'll produce visualisations for each at the end of the section.
If anyone has any recommendations for packages they've used that didn't have a vignette or comprehensive online tutorial, hit me up!

@hackseq/2017_team_5

[zhenyisong]

tSNE seems to solve problems in single cell experiments and infer lineage evolution. I wonder if someone else use the Manifold learning, nonlinear grouping approach.