Duplicated error messages

[rvhonorato]

Most of the errors/warning are now duplicated;

[2022-07-29 09:28:54,264 cli INFO] 
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#                 HADDOCK 3                  #
#                                            #
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Starting HADDOCK 3.0.0 on 2022-07-29 09:28:00

Python 3.9.0 | packaged by conda-forge | (default, Nov 26 2020, 07:54:06) 
[Clang 11.0.0 ]

[2022-07-29 09:28:54,305 libutil ERROR] Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
Traceback (most recent call last):
  File "/Users/rodrigo/repos/haddock3/src/haddock/libs/libutil.py", line 305, in log_error_and_exit
    yield
  File "/Users/rodrigo/repos/haddock3/src/haddock/clis/cli.py", line 135, in main
    params, other_params = setup_run(
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 185, in setup_run
    validate_module_names_are_not_misspelled(params)
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 616, in validate_module_names_are_not_misspelled
    validate_parameters_are_not_misspelled(
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 633, in validate_parameters_are_not_misspelled
    raise ValueError(emsg)
ValueError: Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
[2022-07-29 09:28:54,305 libutil ERROR] Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
Traceback (most recent call last):
  File "/Users/rodrigo/repos/haddock3/src/haddock/libs/libutil.py", line 305, in log_error_and_exit
    yield
  File "/Users/rodrigo/repos/haddock3/src/haddock/clis/cli.py", line 135, in main
    params, other_params = setup_run(
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 185, in setup_run
    validate_module_names_are_not_misspelled(params)
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 616, in validate_module_names_are_not_misspelled
    validate_parameters_are_not_misspelled(
  File "/Users/rodrigo/repos/haddock3/src/haddock/gear/prepare_run.py", line 633, in validate_parameters_are_not_misspelled
    raise ValueError(emsg)
ValueError: Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
[2022-07-29 09:28:54,309 libutil ERROR] Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
[2022-07-29 09:28:54,309 libutil ERROR] Parameter 'optint' is not a valid general parameter, did you mean 'mdscoring'?
[2022-07-29 09:28:54,310 libutil ERROR] An error has occurred, see log file. And contact the developers if needed.
[2022-07-29 09:28:54,310 libutil ERROR] An error has occurred, see log file. And contact the developers if needed.
[2022-07-29 09:28:54,314 libutil INFO] Finished at 29/07/2022 09:28:54. For any help contact us at https://github.com/haddocking/haddock3/issues. Au revoir! Agur! Ciao!.