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v1.13.0 Release

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@nswork168 nswork168 released this 23 Jul 14:45
· 1 commit to main since this release

[1.13.0] - 2025-07-23

Added

  • New development version: SEgene_analyzer_erna:
    • eRNAbase-specific analysis tool derived from SEgene_region_package
    • Command-line interface with 4 specialized commands: report, single, batch, prepare-stats
    • pip-installable package with erna-analyzer system-wide command
    • Support for multiple BED files and Parquet metadata format specific to eRNAbase
    • Species filtering functionality (human/mouse) for eRNAbase datasets
    • Comprehensive bilingual documentation (English and Japanese)
    • Enhanced chromosome filtering and validation for genomic region analysis
    • WSL-compatible matplotlib backend configuration for headless environments
    • Complete test suite with real eRNAbase data validation (858 samples)
    • Statistical enrichment analysis with Fisher's exact test and FDR correction
    • Multiple output formats: PNG, SVG, PDF, CSV, HTML reports
    • Positioned as eRNAbase-specialized counterpart to SEgene_analyzer

Changed

  • Documentation updates:
    • Added SEgene_analyzer_erna to "Development Versions" section in main README files
    • Updated usage links to include the new development version documentation