v1.1.0 Release

[1.1.0] - 2025-02-07

Added

• New CLI tools (cli_tools/) for streamlined featureCounts processing, CPM calculation, and SE–gene correlation analysis
  • Scripts such as generate_gtf.py, generate_file_list.sh, run_featurecounts_array.sh, etc.
  • correlation_analysis.py computes Pearson correlation between SE (CPM) and genes (TPM)
• Documentation updates:
  • Added English (README.md) and Japanese (README_ja.md) documentation under cli_tools/
  • Updated the main repository documentation (README.md) and SE_to_gene_links/ docs to explain how to integrate the new CLI tools

Changed

• Refined repository structure by separating stand-alone CLI scripts into cli_tools/, independent of SEgene_package

Notes

• The newly added documents provide usage instructions and workflow details in both English and Japanese
• Enables advanced or extended analyses on top of the existing SE_to_gene_links functionalities

Full Changelog: v1.0.0...v1.1.0