Skip to content

empty variant collection when loading strelka vcf #16

@timodonnell

Description

@timodonnell

Loading the below strelka shared strelka VCF, I seem to get an empty variant collection back.

>> vc = varcode.VariantCollection("/Users/tim/Box Sync/pt189/variants/strelka-somatic-primary-illumina-exome/passed.somatic.snvs.vcf")
>> len(vc)
0

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions