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Cufflinks RNA filtering#73

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iskandr merged 9 commits intomasterfrom
cufflinks_rna_filtering
Apr 29, 2015
Merged

Cufflinks RNA filtering#73
iskandr merged 9 commits intomasterfrom
cufflinks_rna_filtering

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@iskandr
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@iskandr iskandr commented Apr 28, 2015

Helper functions for loading Cufflinks fpkm_tracking files, filtering collections by expression, and misc. fixes.

  • API change: changed gene_names(), gene_ids(), genes(), transcripts() to memoized properties, added transcript_names, transcript_ids.

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Comment thread test/test_load_cufflinks_fpkm.py Outdated
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merge gibbberish

@timodonnell
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see comments, but otherwise lgtm

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iskandr commented Apr 28, 2015

Sorry, there was some obviously broken/repeated code because I hadn't pushed my updates.

iskandr added a commit that referenced this pull request Apr 29, 2015
@iskandr iskandr merged commit 8a1fe39 into master Apr 29, 2015
@iskandr iskandr deleted the cufflinks_rna_filtering branch April 29, 2015 02:12
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2 participants