GENBoostGPU v0.3.0 — CpG pipeline, VMR alignment & h² fixes
Highlights
- New CpG-centric pipeline built on the validated VMR workflow.
- Heritability (h²) corrections: null calibration and unscaling patch.
- Docs refresh: tuned workflow reflected across README, tutorials, and a new user-guide page.
- Cleanup: legacy pipeline module and references removed.
✨ New
- CpG Pipeline based on validated VMR
Introduces a scalable CpG-first workflow for million-scale panels and curated signatures. Includes helper docs, examples, and guidance for large runs.
PRs: #11, #12, #13
🛠 Improvements
- Docs & tutorials aligned with tuned workflow (global tuning guidance carried through examples).
PRs: #6, #7 - Installation docs updated for a smoother setup path (drivers/CUDA, RAPIDS, CuPy/cuDF notes).
PR: #6 - README additions describing the CpG million-scale pipeline and entry points.
PR: #12
🐛 Fixes
- Calibrate h² under the null to improve interpretability and guard against spurious inflation.
PR: #8 - Patch h² unscaling to ensure consistent reporting across windows and summaries.
PR: #9
🔥 Breaking / Removals
- Removed legacy pipeline module and documentation references.
Projects depending on the old pipeline should migrate to the CpG pipeline and/or the tuned VMR workflow described in the updated guides.
PR: #10
📚 Documentation
- New CpG pipeline user-guide page with links from the main docs and README.
PR: #13 - README now includes a million-scale CpG pipeline overview and pointers to examples.
PR: #12
Upgrade notes
- Review the updated Installation and CpG Pipeline pages for environment and workflow changes (RAPIDS/CUDA versions, tuning flags).
- If you used the legacy pipeline, update imports and scripts to the CpG/VMR workflows per the new guides.
Full Changelog: v0.2.0...v0.3.0