GitHub - heartsh/contralign-fixed: CONTRAlign fixed to compile in recent environments

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
.gitignore		.gitignore
Annealing.hpp		Annealing.hpp
Annealing.ipp		Annealing.ipp
BundleMethod.hpp		BundleMethod.hpp
BundleMethod.ipp		BundleMethod.ipp
CGLinear.hpp		CGLinear.hpp
CGLinear.ipp		CGLinear.ipp
CGOptimizationWrapper.hpp		CGOptimizationWrapper.hpp
CGOptimizationWrapper.ipp		CGOptimizationWrapper.ipp
ComputationEngine.hpp		ComputationEngine.hpp
ComputationEngine.ipp		ComputationEngine.ipp
ComputationWrapper.hpp		ComputationWrapper.hpp
ComputationWrapper.ipp		ComputationWrapper.ipp
Config.hpp		Config.hpp
Contralign.cpp		Contralign.cpp
DistributedComputation.hpp		DistributedComputation.hpp
DistributedComputation.ipp		DistributedComputation.ipp
FileDescription.cpp		FileDescription.cpp
FileDescription.hpp		FileDescription.hpp
InferenceEngine.hpp		InferenceEngine.hpp
InferenceEngine.ipp		InferenceEngine.ipp
InnerOptimizationWrapper.hpp		InnerOptimizationWrapper.hpp
InnerOptimizationWrapper.ipp		InnerOptimizationWrapper.ipp
InnerOptimizationWrapperBundleMethod.hpp		InnerOptimizationWrapperBundleMethod.hpp
InnerOptimizationWrapperBundleMethod.ipp		InnerOptimizationWrapperBundleMethod.ipp
InnerOptimizationWrapperLBFGS.hpp		InnerOptimizationWrapperLBFGS.hpp
InnerOptimizationWrapperLBFGS.ipp		InnerOptimizationWrapperLBFGS.ipp
InnerOptimizationWrapperSubgradientMethod.hpp		InnerOptimizationWrapperSubgradientMethod.hpp
InnerOptimizationWrapperSubgradientMethod.ipp		InnerOptimizationWrapperSubgradientMethod.ipp
InnerOptimizationWrapperViterbi.hpp		InnerOptimizationWrapperViterbi.hpp
InnerOptimizationWrapperViterbi.ipp		InnerOptimizationWrapperViterbi.ipp
LBFGS.hpp		LBFGS.hpp
LBFGS.ipp		LBFGS.ipp
LineSearch.hpp		LineSearch.hpp
LineSearch.ipp		LineSearch.ipp
LogSpace.hpp		LogSpace.hpp
MakeDefaults.pl		MakeDefaults.pl
Makefile		Makefile
MultiSequence.cpp		MultiSequence.cpp
MultiSequence.hpp		MultiSequence.hpp
OptimizationWrapper.hpp		OptimizationWrapper.hpp
OptimizationWrapper.ipp		OptimizationWrapper.ipp
Options.cpp		Options.cpp
Options.hpp		Options.hpp
OuterOptimizationWrapper.hpp		OuterOptimizationWrapper.hpp
OuterOptimizationWrapper.ipp		OuterOptimizationWrapper.ipp
ParameterManager.hpp		ParameterManager.hpp
ParameterManager.ipp		ParameterManager.ipp
ProbabilisticConsistency.hpp		ProbabilisticConsistency.hpp
ProbabilisticConsistency.ipp		ProbabilisticConsistency.ipp
Progressive.hpp		Progressive.hpp
Progressive.ipp		Progressive.ipp
SStruct.cpp		SStruct.cpp
SStruct.hpp		SStruct.hpp
ScorePrediction.cpp		ScorePrediction.cpp
Sequence.cpp		Sequence.cpp
Sequence.hpp		Sequence.hpp
SparseMatrix.hpp		SparseMatrix.hpp
SparseMatrix.ipp		SparseMatrix.ipp
SpectralConsistency.hpp		SpectralConsistency.hpp
SpectralConsistency.ipp		SpectralConsistency.ipp
SubgradientMethod.hpp		SubgradientMethod.hpp
SubgradientMethod.ipp		SubgradientMethod.ipp
Tree.cpp		Tree.cpp
Tree.hpp		Tree.hpp
Tree.ipp		Tree.ipp
Utilities.cpp		Utilities.cpp
Utilities.hpp		Utilities.hpp
Utilities.ipp		Utilities.ipp
contralign.params.protein		contralign.params.protein
contralign.params.rna		contralign.params.rna
roc_area.pl		roc_area.pl
score_directory.pl		score_directory.pl