Hi!
I'm running diffcoexp on a set of 27000 genes. Although all my genes have gene names and count values, I get several errors during the run, resulting in a DCL data.frame with mostly NA's. The DCGs are identified and the data frame with the results looks ok. When I run it in R locally, I get no warnings, but in a cluster I get the following:
<Warning messages:
1: In stats::cor(x, y, use, method) : the standard deviation is zero
2: In stats::cor(x, y, use, method) : the standard deviation is zero
3: In igraph::graph.data.frame(name.DCL) :
In d' NA' elements were replaced with string "NA"
4: In igraph::graph.data.frame(name.same) :
In d' NA' elements were replaced with string "NA">
I assume this is related with the DCL issue, but I could not find a way around it.
Thanks!
Hi!
I'm running diffcoexp on a set of 27000 genes. Although all my genes have gene names and count values, I get several errors during the run, resulting in a DCL data.frame with mostly NA's. The DCGs are identified and the data frame with the results looks ok. When I run it in R locally, I get no warnings, but in a cluster I get the following:
<Warning messages:
1: In stats::cor(x, y, use, method) : the standard deviation is zero
2: In stats::cor(x, y, use, method) : the standard deviation is zero
3: In igraph::graph.data.frame(name.DCL) :
In
d'NA' elements were replaced with string "NA"4: In igraph::graph.data.frame(name.same) :
In
d'NA' elements were replaced with string "NA">I assume this is related with the DCL issue, but I could not find a way around it.
Thanks!