SpliceAI‐aware TOGA2

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Yury V. Malovichko edited this page Aug 28, 2025 · 1 revision

Overview

SpliceAI data acquisition

Via `toga2.py spliceai`

Via custom SpliceAI solution

Via UCSC data portal

Storing SpliceAI data for TOGA2 compatibility

Using SpliceAI data with TOGA2

Splice site correction

Correction modes

Additional parameters

Query-specific intron annotation

Parameters

Notes on SpliceAI-aware TOGA2 runtime