Skip to content

v2.2.6

Choose a tag to compare

@HobnobMancer HobnobMancer released this 12 Jan 15:20
· 261 commits to master since this release
0672fab

Fix cazy_webscraper crashing from missing arguments to function calls when retrieving the latest taxonomic classifications for proteins when a batch on protein IDs contains an invalid ID:

Traceback (most recent call last):
  File "...bin/cazy_webscraper", line 33, in <module>
    sys.exit(load_entry_point('cazy-webscraper', 'console_scripts', 'cazy_webscraper')())
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File ".../cazy_webscraper/cazy_scraper.py", line 246, in main
    get_cazy_data(
  File "...//cazy_webscraper/cazy_scraper.py", line 355, in get_cazy_data cazy_data, successful_replacement = replace_multiple_tax(
                                        ^^^^^^^^^^^^^^^^^^^^^
  File ".../cazy_webscraper/ncbi/taxonomy/multiple_taxa.py", line 135, in replace_multiple_tax
    cazy_data, success = replace_multiple_tax_with_invalid_ids(cazy_data, args)

What's Changed

Full Changelog: v2.2.5...v2.2.6