applied PackageJanitor

.github/workflows/Tests.yml

@@ -61,7 +61,7 @@ jobs:
           if [ -d "HigherHomologicalAlgebra/ToolsForHigherHomologicalAlgebra" ]; then make -C "HigherHomologicalAlgebra/ToolsForHigherHomologicalAlgebra" doc; fi
           if [ -d "homalg_project/homalg" ]; then make -C "homalg_project/homalg" doc; fi
           if [ -d "homalg_project/Modules" ]; then make -C "homalg_project/Modules" doc; fi
-          if [ -d "CategoricalTowers/CategoryConstructor" ]; then make -C "CategoricalTowers/CategoryConstructor" doc; fi
+          if [ -d "CategoricalTowers/ToolsForCategoricalTowers" ]; then make -C "CategoricalTowers/ToolsForCategoricalTowers" doc; fi
           if [ -d "CategoricalTowers/Toposes" ]; then make -C "CategoricalTowers/Toposes" doc; fi
       - name: Test LoopIntegrals
         run: |

PackageInfo.g

@@ -10,7 +10,7 @@ SetPackageInfo( rec(
 
 PackageName := "LoopIntegrals",
 Subtitle := "Compute master integrals using commutative and noncommutative methods from computational algebraic geometry",
-Version := "2023.11-04",
+Version := "2024.04-01",
 
 Date := (function ( ) if IsBound( GAPInfo.SystemEnvironment.GAP_PKG_RELEASE_DATE ) then return GAPInfo.SystemEnvironment.GAP_PKG_RELEASE_DATE; else return Concatenation( ~.Version{[ 1 .. 4 ]}, "-", ~.Version{[ 6, 7 ]}, "-01" ); fi; end)( ),
 
@@ -112,7 +112,7 @@ PackageDoc := rec(
 ),
 
 Dependencies := rec(
-  GAP := ">= 4.12.1",
+  GAP := ">= 4.13.0",
   NeededOtherPackages := [
                    [ "GAPDoc", ">= 1.5" ],
                    [ "MatricesForHomalg", ">= 2023.11-01" ],

dev/.release

@@ -14,7 +14,7 @@ sed "s;Date := .*;Date := \"$(date -I)\",;" PackageInfo.g > PackageInfo.g.bak
 mv PackageInfo.g.bak PackageInfo.g
 
 # replace links to packages which are possibly referenced in the documentation, keep this in sync with `Tests.yml.j2`
-for package in CAP_project/CAP CAP_project/CompilerForCAP CAP_project/MonoidalCategories CAP_project/CartesianCategories CAP_project/FreydCategoriesForCAP HigherHomologicalAlgebra/ToolsForHigherHomologicalAlgebra homalg_project/homalg homalg_project/Modules CategoricalTowers/CategoryConstructor CategoricalTowers/Toposes; do
+for package in CAP_project/CAP CAP_project/CompilerForCAP CAP_project/MonoidalCategories CAP_project/CartesianCategories CAP_project/FreydCategoriesForCAP HigherHomologicalAlgebra/ToolsForHigherHomologicalAlgebra homalg_project/homalg homalg_project/Modules CategoricalTowers/ToolsForCategoricalTowers CategoricalTowers/Toposes; do
 
     # adjust links to other manuals
     # Note that we cannot use sed's `-i` option for in-place editing, as

dev/ci_gaprc

@@ -1,3 +1,5 @@
+SetUserPreference( "ShortBanners", true );
+
 # Prefer GAPInfo.UserGapRoot over other package directories to prevent accidentally testing package
 # versions distributed with GAP.
 
@@ -7,16 +9,7 @@ FORCE_LOADING_FROM_USER_GAP_ROOT := function ( )
         package_info := GAPInfo.PackagesInfo.(name);
         pos := PositionProperty( package_info, info -> StartsWith( info.InstallationPath, GAPInfo.UserGapRoot ) );
         if pos <> fail then
-            # work around https://github.com/gap-system/gap/pull/5178
-            if IsBound( GAPInfo.PackagesLoaded.(name) ) then
-                if StartsWith( GAPInfo.PackagesLoaded.(name)[1], GAPInfo.UserGapRoot ) then
-                    continue;
-                else
-                    Error( "package already loaded at ", GAPInfo.PackagesLoaded.(name)[1] );
-                fi;
-            else
-                SetPackagePath( name, package_info[pos].InstallationPath );
-            fi;
+            SetPackagePath( name, package_info[pos].InstallationPath );
         fi;
     od;
 end;

dev/release-gap-package

@@ -239,7 +239,9 @@ command -v git >/dev/null 2>&1 ||
     error "the 'git' command was not found, please install it"
 
 if [ "x$PYTHON" != x ] ; then
-    :
+    if ! command -v "$PYTHON" >/dev/null 2>&1; then
+      error "Could not execute python from PYTHON environment variable"
+    fi
 elif command -v python >/dev/null 2>&1; then
     PYTHON=python
 elif command -v python3 >/dev/null 2>&1; then
@@ -361,6 +363,7 @@ fi
 #
 # Determine GitHub repository and username, and the current branch
 #
+if [ $ONLY_TARBALL = no ] ; then
 notice "Using GitHub repository $REPO"
 
 if [ "x$GITHUB_USER" = x ] ; then
@@ -371,11 +374,13 @@ if [ "x$GITHUB_USER" = x ] ; then
 fi
 notice "Using GitHub username $GITHUB_USER"
 
-if [ "x$ONLY_TARBALL" = xno ] ; then
-    BRANCH=$(git symbolic-ref -q --short HEAD)
-    notice "Using branch $BRANCH"
+BRANCH=$(git symbolic-ref -q --short HEAD || echo)
+if [ "x$BRANCH" = x ] ; then
+    notice "no branch! Cannot proceed, exiting."
+    exit 1
+fi
+notice "Using branch $BRANCH"
 fi
-
 
 ######################################################################
 #
@@ -507,7 +512,9 @@ find . -name .DS_Store -exec rm -f {} +
 # * perform additional sanity checks;
 # * ...
 if [ "x$RELEASE_SCRIPT" != x ] ; then
-	. "$RELEASE_SCRIPT"
+    . "$RELEASE_SCRIPT"
+    # do not delete the custom release script since it might be reused, for example by additional packages of a monorepo
+    # if it should be deleted, it can always simply delete itself
 elif [ -f .release ] ; then
     . ./.release
     rm -f .release
@@ -715,7 +722,7 @@ fi
 # BSD and GNU make.
 for f in ./*/*.htm* ; do
   sed \
-    -e 's;href="../../../doc/;href="https://www.gap-system.org/Manuals/doc/;g' \
+    -e 's;href="../../../doc/;href="https://docs.gap-system.org/doc/;g' \
     -e 's;href="../../../pkg/GAPDoc[^\/]*/doc/;href="http://www.math.rwth-aachen.de/~Frank.Luebeck/GAPDoc/doc/;g' \
     -e 's;href="../../../pkg/gapdoc[^\/]*/doc/;href="http://www.math.rwth-aachen.de/~Frank.Luebeck/GAPDoc/doc/;g' \
     "$f" > "$f.bak"

makefile

@@ -43,6 +43,12 @@ test-notebooks:
 		rm modified_in out modified_out; \
 	done
 
+update-notebooks:
+	cd examples/notebooks/; \
+	for filename in *.ipynb; do \
+		jupyter nbconvert --ExecutePreprocessor.kernel_name=julia-$$(julia -e 'print(VERSION.major); print("."); print(VERSION.minor)') --ExecutePreprocessor.record_timing=False --to notebook --inplace --execute "$$filename"; \
+	done
+
 test-spacing:
 	# exit code 1 means no match, which is what we want here (exit code 2 signals an error)
 	grep -R "[^ [\"]  " gap/*.gi; test $$? -eq 1 || (echo "Duplicate spaces found" && exit 1)