Linting: Tighten Ruff rules

[kopperp]

Previously, we used a quite narrow subset of ruff rules. With #109, we can tighten the rules to reduce bug surface.

[github-actions]

☂️ Python Coverage

current status: ✅

Overall Coverage

Lines	Covered	Coverage	Threshold	Status
2987	2684	90%	85%	🟢

New Files

No new covered files...

Modified Files

File	Coverage	Status
pyhope/basis/basis_connect.py	100%	🟢
pyhope/basis/basis_jacobian.py	86%	🟢
pyhope/basis/basis_watertight.py	100%	🟢
pyhope/check/check_health.py	88%	🟢
pyhope/check/check_install.py	79%	🟢
pyhope/common/common_progress.py	57%	🟢
pyhope/common/common_template.py	100%	🟢
pyhope/common/common_tools.py	85%	🟢
pyhope/common/common_vars.py	100%	🟢
pyhope/io/formats/meshio.py	65%	🟢
pyhope/io/formats/vtk.py	100%	🟢
pyhope/io/io.py	99%	🟢
pyhope/io/io_debug.py	99%	🟢
pyhope/io/io_gmsh.py	100%	🟢
pyhope/io/io_xdmf.py	100%	🟢
pyhope/mesh/connect/connect.py	98%	🟢
pyhope/mesh/connect/connect_mortar.py	87%	🟢
pyhope/mesh/connect/connect_rbtree.py	100%	🟢
pyhope/mesh/elements/elements_ordering.py	100%	🟢
pyhope/mesh/elements/elements_shapefunctions.py	100%	🟢
pyhope/mesh/extrude/mesh_extrude.py	92%	🟢
pyhope/mesh/fem/fem.py	99%	🟢
pyhope/mesh/mesh.py	98%	🟢
pyhope/mesh/mesh_builtin.py	100%	🟢
pyhope/mesh/mesh_common.py	100%	🟢
pyhope/mesh/mesh_duplicates.py	100%	🟢
pyhope/mesh/mesh_external.py	100%	🟢
pyhope/mesh/mesh_mortar.py	100%	🟢
pyhope/mesh/mesh_orient.py	100%	🟢
pyhope/mesh/mesh_sides.py	100%	🟢
pyhope/mesh/mesh_sort.py	89%	🟢
pyhope/mesh/mesh_vars.py	100%	🟢
pyhope/mesh/reader/reader_gambit.py	100%	🟢
pyhope/mesh/reader/reader_gmsh.py	100%	🟢
pyhope/mesh/reader/reader_hopr.py	98%	🟢
pyhope/mesh/sort/sort_hilbert.py	100%	🟢
pyhope/mesh/topology/mesh_serendipity.py	98%	🟢
pyhope/mesh/topology/mesh_splittohex.py	84%	🟢
pyhope/mesh/topology/mesh_topology.py	73%	🟢
pyhope/mesh/transform/mesh_transform.py	78%	🟢
pyhope/meshio/meshio_convert.py	67%	🟢
pyhope/meshio/meshio_nodes.py	75%	🟢
pyhope/meshio/meshio_ordering.py	100%	🟢
pyhope/output/output.py	90%	🟢
pyhope/readintools/commandline.py	94%	🟢
pyhope/readintools/readintools.py	100%	🟢
pyhope/script/pyhope_cli.py	98%	🟢
TOTAL	93%	🟢

updated for commit: 1f45823 by action🐍